Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18f07
         (192 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   1.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   1.8  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    20   2.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    19   4.1  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    19   7.1  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    19   7.1  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    19   7.1  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    19   7.1  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    19   7.1  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    19   7.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    19   7.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    19   7.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   7.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   7.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    18   9.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    18   9.4  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 52  RERVMFSITSWRGGYHG 102
           RE + F  T W   Y+G
Sbjct: 424 REAITFQYTDWEEVYNG 440


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 52  RERVMFSITSWRGGYHG 102
           RE + F  T W   Y+G
Sbjct: 424 REAITFQYTDWEEVYNG 440


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 8/24 (33%), Positives = 9/24 (37%)
 Frame = -3

Query: 172 SRCCTSILRKFSGRQHCVTVDCCC 101
           S C  + L       HC  V C C
Sbjct: 58  SACAANCLSLGKAGGHCEKVGCIC 81


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -3

Query: 103 CHGSPHAMR 77
           CHG+P A R
Sbjct: 15  CHGNPDAKR 23


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = +3

Query: 90  GLPWQQQSTVTQCC 131
           G+P ++ +   QCC
Sbjct: 164 GMPGKKNTITYQCC 177


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = +3

Query: 90  GLPWQQQSTVTQCC 131
           G+P ++ +   QCC
Sbjct: 164 GMPGKKNTITYQCC 177


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = +3

Query: 90  GLPWQQQSTVTQCC 131
           G+P ++ +   QCC
Sbjct: 164 GMPGKKNTITYQCC 177


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = +3

Query: 90  GLPWQQQSTVTQCC 131
           G+P ++ +   QCC
Sbjct: 164 GMPGKKNTITYQCC 177


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = +3

Query: 90  GLPWQQQSTVTQCC 131
           G+P ++ +   QCC
Sbjct: 164 GMPGKKNTITYQCC 177


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = +3

Query: 90  GLPWQQQSTVTQCC 131
           G+P ++ +   QCC
Sbjct: 164 GMPGKKNTITYQCC 177


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = +3

Query: 90  GLPWQQQSTVTQCC 131
           G+P ++ +   QCC
Sbjct: 232 GMPGKKNTITYQCC 245


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = +3

Query: 90  GLPWQQQSTVTQCC 131
           G+P ++ +   QCC
Sbjct: 232 GMPGKKNTITYQCC 245


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 128  ALCHS*LLLPW*PPRHEV 75
            AL  S +L+ W PP  E+
Sbjct: 1017 ALSSSEILITWSPPLPEL 1034


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 128  ALCHS*LLLPW*PPRHEV 75
            AL  S +L+ W PP  E+
Sbjct: 1013 ALSSSEILITWSPPLPEL 1030


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 83  GVGATMAAAV 112
           G+G  MAAAV
Sbjct: 110 GIGLAMAAAV 119


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 6/22 (27%), Positives = 8/22 (36%)
 Frame = -3

Query: 169 RCCTSILRKFSGRQHCVTVDCC 104
           +CC       SG+       CC
Sbjct: 809 QCCPGFTMTKSGKTRHQNTGCC 830


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,083
Number of Sequences: 438
Number of extensions: 968
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 43
effective length of database: 127,509
effective search space used:  2550180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)