Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18f06
         (826 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF115515-1|AAO06952.1|  277|Homo sapiens MSTP052 protein.              45   4e-04
BC064898-1|AAH64898.1|  294|Homo sapiens C3orf33 protein protein.      44   5e-04
BC042198-1|AAH42198.1|  293|Homo sapiens C3orf33 protein protein.      44   5e-04
AK055701-1|BAB70989.1|  251|Homo sapiens protein ( Homo sapiens ...    44   7e-04

>AF115515-1|AAO06952.1|  277|Homo sapiens MSTP052 protein.
          Length = 277

 Score = 44.8 bits (101), Expect = 4e-04
 Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
 Frame = -3

Query: 824 R*VSQFSKASKVPDHFIRNHEPLKGLYAGVQHSPVRV-LVNHKAPIYLPLWHSSKPPLPV 648
           R  S+F+ +S +P  FIR +  L+G    +  + + +  +    PI   L    +  L V
Sbjct: 40  RLTSKFTSSSDIPVEFIRRNVKLRGRLRRITENGLEIEHIPITLPIIASLRKEPRGALLV 99

Query: 647 KLWGIEVV-SGNAVNWLECVARGQQVT-LKPIGRDNDDLVSTVLLHLPQPKSKDVQTLDI 474
           KL G+E+  +G A  WL+   +  Q+  ++ +G++N  L   +L++          ++++
Sbjct: 100 KLAGVELAETGKA--WLQKELKPSQLLWVQLLGKENSALFCYLLVN-----KGGYFSVNL 152

Query: 473 GKKLVELGFAKASFPKELKKNT-IESQIAPALLSAEAQAKSLRNGIWSEN 327
            ++++  G  K    K LK ++ I   +   LL AE  A     GIW E+
Sbjct: 153 NEEILRRGLGKTVLVKGLKYDSKIYWTVHRNLLKAELTALKKGEGIWKED 202


>BC064898-1|AAH64898.1|  294|Homo sapiens C3orf33 protein protein.
          Length = 294

 Score = 44.4 bits (100), Expect = 5e-04
 Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
 Frame = -3

Query: 824 R*VSQFSKASKVPDHFIRNHEPLKGLYAGVQHSPVRV-LVNHKAPIYLPLWHSSKPPLPV 648
           R  S+F+ +S +P  FIR +  L+G    +  + + +  +    PI   L    +  L V
Sbjct: 57  RLTSKFTSSSDIPVEFIRRNVKLRGRLRRITENGLEIEHIPITLPIIASLRKEPRGALLV 116

Query: 647 KLWGIEVV-SGNAVNWLECVARGQQVT-LKPIGRDNDDLVSTVLLHLPQPKSKDVQTLDI 474
           KL G+E+  +G A  WL+   +  Q+   + +G++N  L   +L++          ++++
Sbjct: 117 KLAGVELAETGKA--WLQKELKPSQLLWFQLLGKENSALFCYLLVN-----KGGYFSVNL 169

Query: 473 GKKLVELGFAKASFPKELKKNT-IESQIAPALLSAEAQAKSLRNGIWSEN 327
            ++++  G  K    K LK ++ I   +   LL AE  A     GIW E+
Sbjct: 170 NEEILRRGLGKTVLVKGLKYDSKIYWTVHRNLLKAELTALKKGEGIWKED 219


>BC042198-1|AAH42198.1|  293|Homo sapiens C3orf33 protein protein.
          Length = 293

 Score = 44.4 bits (100), Expect = 5e-04
 Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
 Frame = -3

Query: 824 R*VSQFSKASKVPDHFIRNHEPLKGLYAGVQHSPVRV-LVNHKAPIYLPLWHSSKPPLPV 648
           R  S+F+ +S +P  FIR +  L+G    +  + + +  +    PI   L    +  L V
Sbjct: 56  RLTSKFTSSSDIPVEFIRRNVKLRGRLRRITENGLEIEHIPITLPIIASLRKEPRGALLV 115

Query: 647 KLWGIEVV-SGNAVNWLECVARGQQVT-LKPIGRDNDDLVSTVLLHLPQPKSKDVQTLDI 474
           KL G+E+  +G A  WL+   +  Q+   + +G++N  L   +L++          ++++
Sbjct: 116 KLAGVELAETGKA--WLQKELKPSQLLWFQLLGKENSALFCYLLVN-----KGGYFSVNL 168

Query: 473 GKKLVELGFAKASFPKELKKNT-IESQIAPALLSAEAQAKSLRNGIWSEN 327
            ++++  G  K    K LK ++ I   +   LL AE  A     GIW E+
Sbjct: 169 NEEILRRGLGKTVLVKGLKYDSKIYWTVHRNLLKAELTALKKGEGIWKED 218


>AK055701-1|BAB70989.1|  251|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31139 fis, clone IMR322001185. ).
          Length = 251

 Score = 44.0 bits (99), Expect = 7e-04
 Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 4/170 (2%)
 Frame = -3

Query: 824 R*VSQFSKASKVPDHFIRNHEPLKGLYAGVQHSPVRV-LVNHKAPIYLPLWHSSKPPLPV 648
           R  S+F+ +S +P  FIR +  L+G    +  + + +  +    PI   L    +  L V
Sbjct: 14  RLTSKFTSSSDIPVEFIRRNVKLRGRLRRITENGLEIEHIPITLPIIASLRKEPRGALLV 73

Query: 647 KLWGIEVV-SGNAVNWLECVARGQQVT-LKPIGRDNDDLVSTVLLHLPQPKSKDVQTLDI 474
           KL G+E+  +G A  WL+   +  Q+   + +G++N  L   +L+           ++++
Sbjct: 74  KLAGVELAETGKA--WLQKELKPSQLLWFQLLGKENSALFCYLLV-----SKGGYFSVNL 126

Query: 473 GKKLVELGFAKASFPKELKKNT-IESQIAPALLSAEAQAKSLRNGIWSEN 327
            ++++  G  K    K LK ++ I   +   LL AE  A     GIW E+
Sbjct: 127 NEEILRRGLGKTVLVKGLKYDSKIYWTVHRNLLKAELTALKKGEGIWKED 176


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,648,352
Number of Sequences: 237096
Number of extensions: 2624385
Number of successful extensions: 5171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5171
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10315140830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)