Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18f06
         (826 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060312-1|AAL25351.1|  239|Drosophila melanogaster GH17623p pro...    57   3e-08
AE013599-272|AAS64795.1|  239|Drosophila melanogaster CG30159-PB...    57   3e-08
AE013599-271|AAM70842.1|  239|Drosophila melanogaster CG30159-PA...    57   3e-08

>AY060312-1|AAL25351.1|  239|Drosophila melanogaster GH17623p
           protein.
          Length = 239

 Score = 56.8 bits (131), Expect = 3e-08
 Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 3/129 (2%)
 Frame = -3

Query: 818 VSQFSKASKVPDHFIRNHEPLKGLYAGV--QHSPVRVLVNHKAPIYLPLWHSSKPPLPVK 645
           V QF + S +P+  I       G  AGV  Q     +++ H+ P++ P++ SSK  LPVK
Sbjct: 51  VRQFKQPSHIPERLINERVMHTGKIAGVKQQEQDTLLMIQHR-PLF-PIFTSSKRLLPVK 108

Query: 644 LWGIEVVSGNAVNWLECVARGQQVTLKPI-GRDNDDLVSTVLLHLPQPKSKDVQTLDIGK 468
           L G+  V+ N  +WL+    G++ T  P+      D V   L  +  P+    + LD+ +
Sbjct: 109 LPGVR-VNANGYSWLQQCLIGREATFLPLKSAKGQDFVVCQLCLVHPPRGN--RLLDVSE 165

Query: 467 KLVELGFAK 441
            L++L FA+
Sbjct: 166 TLLKLRFAR 174


>AE013599-272|AAS64795.1|  239|Drosophila melanogaster CG30159-PB,
           isoform B protein.
          Length = 239

 Score = 56.8 bits (131), Expect = 3e-08
 Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 3/129 (2%)
 Frame = -3

Query: 818 VSQFSKASKVPDHFIRNHEPLKGLYAGV--QHSPVRVLVNHKAPIYLPLWHSSKPPLPVK 645
           V QF + S +P+  I       G  AGV  Q     +++ H+ P++ P++ SSK  LPVK
Sbjct: 51  VRQFKQPSHIPERLINERVMHTGKIAGVKQQEQDTLLMIQHR-PLF-PIFTSSKRLLPVK 108

Query: 644 LWGIEVVSGNAVNWLECVARGQQVTLKPI-GRDNDDLVSTVLLHLPQPKSKDVQTLDIGK 468
           L G+  V+ N  +WL+    G++ T  P+      D V   L  +  P+    + LD+ +
Sbjct: 109 LPGVR-VNANGYSWLQQCLIGREATFLPLKSAKGQDFVVCQLCLVHPPRGN--RLLDVSE 165

Query: 467 KLVELGFAK 441
            L++L FA+
Sbjct: 166 TLLKLRFAR 174


>AE013599-271|AAM70842.1|  239|Drosophila melanogaster CG30159-PA,
           isoform A protein.
          Length = 239

 Score = 56.8 bits (131), Expect = 3e-08
 Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 3/129 (2%)
 Frame = -3

Query: 818 VSQFSKASKVPDHFIRNHEPLKGLYAGV--QHSPVRVLVNHKAPIYLPLWHSSKPPLPVK 645
           V QF + S +P+  I       G  AGV  Q     +++ H+ P++ P++ SSK  LPVK
Sbjct: 51  VRQFKQPSHIPERLINERVMHTGKIAGVKQQEQDTLLMIQHR-PLF-PIFTSSKRLLPVK 108

Query: 644 LWGIEVVSGNAVNWLECVARGQQVTLKPI-GRDNDDLVSTVLLHLPQPKSKDVQTLDIGK 468
           L G+  V+ N  +WL+    G++ T  P+      D V   L  +  P+    + LD+ +
Sbjct: 109 LPGVR-VNANGYSWLQQCLIGREATFLPLKSAKGQDFVVCQLCLVHPPRGN--RLLDVSE 165

Query: 467 KLVELGFAK 441
            L++L FA+
Sbjct: 166 TLLKLRFAR 174


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,887,948
Number of Sequences: 53049
Number of extensions: 770467
Number of successful extensions: 2232
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2232
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3901127880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)