Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18f05
         (446 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118519-1|AAM49888.1|  104|Drosophila melanogaster LD16736p pro...    32   0.30 
L14644-1|AAB88625.1| 2895|Drosophila melanogaster hyperplastic d...    30   1.2  
AE014297-1012|AAF54431.2| 2885|Drosophila melanogaster CG9484-PA...    30   1.2  
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P...    30   1.2  
AE014297-1210|AAF54562.4| 1483|Drosophila melanogaster CG4509-PB...    28   5.0  
AE014297-2937|AAS65190.1|  181|Drosophila melanogaster CG17284-P...    27   8.7  
AE014297-2936|AAF55855.2|  196|Drosophila melanogaster CG17284-P...    27   8.7  

>AY118519-1|AAM49888.1|  104|Drosophila melanogaster LD16736p
           protein.
          Length = 104

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 21/54 (38%), Positives = 24/54 (44%)
 Frame = +2

Query: 164 SNKSCKLHLHQVKLHKRDNKHTFQRVWRDAQCS*GKQVVAVCMDFFHSSLYHIP 325
           S KSC LH       K D+ HT    +R A C  G+Q V    D  HS    IP
Sbjct: 19  SGKSCLLHHFIESKFKDDSSHTIGVEFRLADCERGRQ-VGKATDMGHSRSGEIP 71


>L14644-1|AAB88625.1| 2895|Drosophila melanogaster hyperplastic discs
            protein protein.
          Length = 2895

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = -1

Query: 233  GKCACCPACVTLLGEGATCKIYSKELGETPSAVCKEPLKCIKRVCTKLV*SFSLAGK 63
            G   CC  C  +  +G  CK+  K    T    C E  KC   +   L   F+L  K
Sbjct: 1236 GSLCCCTECARVCHKGHDCKL--KRTAPTAYCDCWEKCKCKALIAGNLTKRFALLCK 1290


>AE014297-1012|AAF54431.2| 2885|Drosophila melanogaster CG9484-PA
            protein.
          Length = 2885

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = -1

Query: 233  GKCACCPACVTLLGEGATCKIYSKELGETPSAVCKEPLKCIKRVCTKLV*SFSLAGK 63
            G   CC  C  +  +G  CK+  K    T    C E  KC   +   L   F+L  K
Sbjct: 1243 GSLCCCTECARVCHKGHDCKL--KRTAPTAYCDCWEKCKCKALIAGNLTKRFALLCK 1297


>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
            protein.
          Length = 23015

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
 Frame = -1

Query: 311  DYCEKNPCIQPPLVCPKNTEHR-ARHAGKCACCPACVTLLGEGA--TCKIYSKELGETPS 141
            D+ +KNPC+  P  C +N+E +   +   C+C P  +     G    C I S + G+T S
Sbjct: 9092 DHPKKNPCVPSP--CGRNSECKLLNNRAVCSCIPGYLGDPQSGCQPECDINS-DCGDTLS 9148

Query: 140  AV---CKEPLKCIKRVC 99
             +   C +P  C   +C
Sbjct: 9149 CINHKCVDP--CAGAIC 9163



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/61 (26%), Positives = 24/61 (39%)
 Frame = -1

Query: 296   NPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCKIYSKELGETPSAVCKEPLK 117
             +PC+  P  C  N+E R   A + A C      +G    C+       E P  +    L+
Sbjct: 10490 DPCVPSP--CGPNSECRVSAANEQAVCSCLQHYVGRAPNCRPECTSDSECPGNLACINLR 10547

Query: 116   C 114
             C
Sbjct: 10548 C 10548



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/66 (31%), Positives = 27/66 (40%)
 Frame = -1

Query: 311   DYCEKNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCKIYSKELGETPSAVC 132
             D   ++PC   P  C  N+E RA  AG+ A C      +G    CK       E PS + 
Sbjct: 15295 DIVPQDPCRPSP--CGPNSECRA--AGETATCTCLGDFVGSPPYCKPECVANSECPSNLA 15350

Query: 131   KEPLKC 114
                 KC
Sbjct: 15351 CINQKC 15356


>AE014297-1210|AAF54562.4| 1483|Drosophila melanogaster CG4509-PB
           protein.
          Length = 1483

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 355 HALRQQRTVLWYVVQTTVKKIHAYSHHLFALRTLSI 248
           H+L+QQ  +L  ++    K  +AY+ H  AL T S+
Sbjct: 861 HSLKQQNALLRQILMEKEKLENAYTQHEVALETQSL 896


>AE014297-2937|AAS65190.1|  181|Drosophila melanogaster CG17284-PB,
           isoform B protein.
          Length = 181

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = -3

Query: 441 SILTCTQDYYEKRIQKFQ----NENVDFYNAGGMRCV 343
           S+ +CT DY  KR+Q+FQ      + DFY A  + CV
Sbjct: 108 SLNSCT-DYARKRVQEFQWMPKKGDCDFYPATLLACV 143


>AE014297-2936|AAF55855.2|  196|Drosophila melanogaster CG17284-PA,
           isoform A protein.
          Length = 196

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = -3

Query: 441 SILTCTQDYYEKRIQKFQ----NENVDFYNAGGMRCV 343
           S+ +CT DY  KR+Q+FQ      + DFY A  + CV
Sbjct: 123 SLNSCT-DYARKRVQEFQWMPKKGDCDFYPATLLACV 158


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,330,482
Number of Sequences: 53049
Number of extensions: 453387
Number of successful extensions: 1365
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1364
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1435027293
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)