Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18f01
         (159 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   0.77 
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    23   5.4  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    23   7.2  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    22   9.5  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    22   9.5  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    22   9.5  
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    22   9.5  

>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 22   HTCPRIHSGITTYVFNHINIYTASICTTVCVS 117
            H    + S + TY FN      AS+ T +C+S
Sbjct: 1274 HLVLELWSDVLTYAFNEEKTIRASLPTLICLS 1305


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 1   VPGNTD--THTCPRIHSGITTYVFNHINIYTASI 96
           VP  +D  +H+ PR   G+T+   +H N   A++
Sbjct: 133 VPPKSDAKSHSAPRSLEGVTSLSDSHFNSLEANL 166


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = +1

Query: 13  TDTHTCPRIHSGITTYVFNHINIYTASICTTVCVSDG 123
           +D  T   +H  +++ + NH  + +   C  V   DG
Sbjct: 450 SDDRTAHTVHEKVSSAISNHSALSSQPTCVIVDEIDG 486


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 111 TYCCTYRCCI 82
           +Y CT+ CCI
Sbjct: 492 SYLCTFTCCI 501


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 16  DTHTCPRIHSGIT-TYVFNHINIYTASICTTVCVSDG 123
           +   CP  +     + +++  + YTAS CT +   +G
Sbjct: 82  ENRACPNAYMKYNRSLIYHGYSSYTASSCTAIYECEG 118


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 80  IFIWLKTYVVIPECILG 30
           +FI +  YV+IP  +LG
Sbjct: 563 LFILIGCYVIIPTALLG 579


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 154 RLANQIITKRIHPT 113
           R AN+++  +IHPT
Sbjct: 107 RRANELVKNKIHPT 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 677,162
Number of Sequences: 5004
Number of extensions: 10089
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 33
effective length of database: 2,197,346
effective search space used: 41749574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)