Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18f01
         (159 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens ...    33   0.13 
AK124805-1|BAC85954.1|  189|Homo sapiens protein ( Homo sapiens ...    31   0.51 
AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens ...    29   3.6  

>AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens
          cDNA FLJ45698 fis, clone FEBRA2017811. ).
          Length = 415

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 10 NTDTHTCPRIHSGITTYVFNHIN 78
          +TDTHTC  IHS I T+   HI+
Sbjct: 16 HTDTHTCTHIHSHIHTFTCTHIH 38


>AK124805-1|BAC85954.1|  189|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42815 fis, clone BRCAN2014143. ).
          Length = 189

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 19  THTCPRIHSGITTYVFNHINIYTASICTTVCV 114
           TH C R+H     YV  +I+I    +C  VCV
Sbjct: 59  THICMRVHVYAYMYVRTYIHIMCMHVCVYVCV 90


>AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46559 fis, clone THYMU3040126. ).
          Length = 303

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 114 HTYCCTYRCC-IDIYMVKDVCRNT*MYSRACMCV 16
           HTY C   C    IY+   VC  T +Y+  C+CV
Sbjct: 78  HTYTCICVCVHTHIYIHMCVCVYTRIYTYTCVCV 111



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 114 HTYCCTYRCCIDIYMVKDVCRNT*MYSRACMCVRVTGH 1
           H Y C +     IY+   VC  T +Y+  CMCV V  H
Sbjct: 158 HVYVCVHT---HIYIHMCVCVYTRIYTYTCMCVCVHTH 192


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,877,508
Number of Sequences: 237096
Number of extensions: 393288
Number of successful extensions: 690
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 76,859,062
effective HSP length: 32
effective length of database: 69,271,990
effective search space used: 1385439800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)