Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18f01
         (159 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098992-7|AAC67455.2|  224|Caenorhabditis elegans Hypothetical ...    25   5.5  
AC199167-2|ABO33246.1|  222|Caenorhabditis elegans Hypothetical ...    25   9.6  
AC199167-1|ABO33247.1|  233|Caenorhabditis elegans Hypothetical ...    25   9.6  

>AF098992-7|AAC67455.2|  224|Caenorhabditis elegans Hypothetical
           protein F53C3.4 protein.
          Length = 224

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -1

Query: 126 GSIRHTYCCTYRCCIDIYMVKD 61
           G   +TYCC   CC  +  +++
Sbjct: 127 GCAEYTYCCGLECCTGLSQLEE 148


>AC199167-2|ABO33246.1|  222|Caenorhabditis elegans Hypothetical
           protein cTel55X.1a protein.
          Length = 222

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 10  NTDTHTCPRIHSGITTYVFNHINIYTASICTTVCV 114
           N   HT P I + +   ++NH +  T++I   + V
Sbjct: 119 NHGLHTLPAITAHLDLAIYNHTSFSTSAILKGIAV 153


>AC199167-1|ABO33247.1|  233|Caenorhabditis elegans Hypothetical
           protein cTel55X.1b protein.
          Length = 233

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 10  NTDTHTCPRIHSGITTYVFNHINIYTASICTTVCV 114
           N   HT P I + +   ++NH +  T++I   + V
Sbjct: 119 NHGLHTLPAITAHLDLAIYNHTSFSTSAILKGIAV 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,828,814
Number of Sequences: 27780
Number of extensions: 61039
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 12,740,198
effective HSP length: 33
effective length of database: 11,823,458
effective search space used: 224645702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)