Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18f01
(159 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 1.4
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 21 1.4
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 19 4.2
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 19 4.2
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 19 4.2
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 19 4.2
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 19 5.6
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 19 5.6
AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter... 19 7.4
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 18 9.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 18 9.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 18 9.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 18 9.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 18 9.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 18 9.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 18 9.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 18 9.8
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.0 bits (42), Expect = 1.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 42 FRYYDIRL*PYKYLYSIYMYNSMCVGW 122
F + I+ P KYL Y + S +GW
Sbjct: 507 FTFNIIKFVPVKYLTYEYPWWSHVLGW 533
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.0 bits (42), Expect = 1.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 42 FRYYDIRL*PYKYLYSIYMYNSMCVGW 122
F + I+ P KYL Y + S +GW
Sbjct: 560 FTFNIIKFVPVKYLTYEYPWWSHVLGW 586
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 19.4 bits (38), Expect = 4.2
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +3
Query: 72 YKYLYSIYMYNSMC 113
YKY Y+ YN+ C
Sbjct: 96 YKYNYNNNNYNNNC 109
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 19.4 bits (38), Expect = 4.2
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +3
Query: 72 YKYLYSIYMYNSMC 113
YKY Y+ YN+ C
Sbjct: 96 YKYNYNNNNYNNNC 109
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 19.4 bits (38), Expect = 4.2
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +3
Query: 72 YKYLYSIYMYNSMC 113
YKY Y+ YN+ C
Sbjct: 96 YKYNYNNNNYNNNC 109
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 19.4 bits (38), Expect = 4.2
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +3
Query: 72 YKYLYSIYMYNSMC 113
YKY Y+ YN+ C
Sbjct: 96 YKYNYNNNNYNNNC 109
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 19.0 bits (37), Expect = 5.6
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = -2
Query: 143 SDYNQEDPSDTHTVV 99
++ DPSDT T++
Sbjct: 956 NEIGASDPSDTVTII 970
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 19.0 bits (37), Expect = 5.6
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +1
Query: 1 VPGNTDTHTCPRI 39
VP NT++ PRI
Sbjct: 773 VPQNTNSQAIPRI 785
>AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter
Am-EAAT protein.
Length = 543
Score = 18.6 bits (36), Expect = 7.4
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +1
Query: 31 PRIHSGITTYVFNHINIYT 87
PRI S +T Y ++ I T
Sbjct: 165 PRIKSVVTAYKADYTKIST 183
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 18.2 bits (35), Expect = 9.8
Identities = 5/10 (50%), Positives = 8/10 (80%)
Frame = -1
Query: 99 TYRCCIDIYM 70
TY+CC + Y+
Sbjct: 173 TYQCCPEPYV 182
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 18.2 bits (35), Expect = 9.8
Identities = 5/10 (50%), Positives = 8/10 (80%)
Frame = -1
Query: 99 TYRCCIDIYM 70
TY+CC + Y+
Sbjct: 173 TYQCCPEPYV 182
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 18.2 bits (35), Expect = 9.8
Identities = 5/10 (50%), Positives = 8/10 (80%)
Frame = -1
Query: 99 TYRCCIDIYM 70
TY+CC + Y+
Sbjct: 173 TYQCCPEPYV 182
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 18.2 bits (35), Expect = 9.8
Identities = 5/10 (50%), Positives = 8/10 (80%)
Frame = -1
Query: 99 TYRCCIDIYM 70
TY+CC + Y+
Sbjct: 173 TYQCCPEPYV 182
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 18.2 bits (35), Expect = 9.8
Identities = 5/10 (50%), Positives = 8/10 (80%)
Frame = -1
Query: 99 TYRCCIDIYM 70
TY+CC + Y+
Sbjct: 173 TYQCCPEPYV 182
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 18.2 bits (35), Expect = 9.8
Identities = 5/10 (50%), Positives = 8/10 (80%)
Frame = -1
Query: 99 TYRCCIDIYM 70
TY+CC + Y+
Sbjct: 173 TYQCCPEPYV 182
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 18.2 bits (35), Expect = 9.8
Identities = 5/10 (50%), Positives = 8/10 (80%)
Frame = -1
Query: 99 TYRCCIDIYM 70
TY+CC + Y+
Sbjct: 241 TYQCCPEPYV 250
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 18.2 bits (35), Expect = 9.8
Identities = 5/10 (50%), Positives = 8/10 (80%)
Frame = -1
Query: 99 TYRCCIDIYM 70
TY+CC + Y+
Sbjct: 241 TYQCCPEPYV 250
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,163
Number of Sequences: 438
Number of extensions: 684
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 32
effective length of database: 132,327
effective search space used: 2646540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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