Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18e23
         (743 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L35153-1|AAA64457.1|  857|Drosophila melanogaster polycomblike n...    30   3.8  
AY075585-1|AAL68389.1| 1043|Drosophila melanogaster SD09488p pro...    30   3.8  
AE013599-2620|AAF57748.2| 1043|Drosophila melanogaster CG5109-PA...    30   3.8  

>L35153-1|AAA64457.1|  857|Drosophila melanogaster polycomblike
           nuclear protein protein.
          Length = 857

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 402 QSVNNATLHGCMFFI-SCIICRNGVEF 479
           Q+     L G MFF+  C +C NG+EF
Sbjct: 543 QNFKKKLLRGDMFFVFCCTVCNNGIEF 569


>AY075585-1|AAL68389.1| 1043|Drosophila melanogaster SD09488p
           protein.
          Length = 1043

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 402 QSVNNATLHGCMFFI-SCIICRNGVEF 479
           Q+     L G MFF+  C +C NG+EF
Sbjct: 543 QNFKKKLLRGDMFFVFCCTVCNNGIEF 569


>AE013599-2620|AAF57748.2| 1043|Drosophila melanogaster CG5109-PA
           protein.
          Length = 1043

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 402 QSVNNATLHGCMFFI-SCIICRNGVEF 479
           Q+     L G MFF+  C +C NG+EF
Sbjct: 543 QNFKKKLLRGDMFFVFCCTVCNNGIEF 569


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,696,143
Number of Sequences: 53049
Number of extensions: 553496
Number of successful extensions: 1191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3375989364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)