Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18e23
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21321-3|AAG00052.2|  655|Caenorhabditis elegans Hypothetical pr...    33   0.28 
Z92829-11|CAE17737.1|  257|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z19153-1|CAA79546.1|  374|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AL032623-11|CAA21505.1|  178|Caenorhabditis elegans Hypothetical...    28   8.0  

>U21321-3|AAG00052.2|  655|Caenorhabditis elegans Hypothetical
           protein ZK177.4 protein.
          Length = 655

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +2

Query: 116 MDRNVILTDNMFSYYYRIT*HKTIDSSLLKLIPQFEVCSIVIQILKNICSKLVWAGQ 286
           +D NV L+DN    + R+  H+ + S + KL+P+  + S  I  + NI  K    G+
Sbjct: 565 VDENVPLSDNEIRIFERLKEHQKMLSDMTKLVPKMTLDSNEIHRMANIVLKKRGTGE 621


>Z92829-11|CAE17737.1|  257|Caenorhabditis elegans Hypothetical
           protein F10A3.16 protein.
          Length = 257

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 209 IPQFEVCSIVIQILKNICSKLVW 277
           IP+   CSI++     +CSKL W
Sbjct: 153 IPRISFCSIIVCFSATLCSKLCW 175


>Z19153-1|CAA79546.1|  374|Caenorhabditis elegans Hypothetical
           protein C38C10.1 protein.
          Length = 374

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 457 SVGTAWNFKCIYYLWWNSNYGNQSSFHSLINT 552
           +VGT+W +  +YY WW  +    +SF  +  T
Sbjct: 64  NVGTSWTYN-LYYDWWYGDLCTLTSFFGIAPT 94


>AL032623-11|CAA21505.1|  178|Caenorhabditis elegans Hypothetical
           protein Y43F8B.11 protein.
          Length = 178

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 730 CFDAFIRSGLRNRERGVQIMKYNSFCVVS 644
           C + F+++ L    +G Q+  +NS CVV+
Sbjct: 122 CAELFVKNSLDTISKGCQLFTHNSECVVT 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,952,136
Number of Sequences: 27780
Number of extensions: 313490
Number of successful extensions: 689
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)