Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18e21
(857 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 48 2e-06
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ... 47 4e-06
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 46 9e-06
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 44 3e-05
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 42 8e-05
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 38 0.001
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 37 0.003
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy... 33 0.039
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 26 6.0
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe... 26 6.0
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos... 26 7.9
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 48.0 bits (109), Expect = 2e-06
Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 5/169 (2%)
Frame = -3
Query: 726 MNVPLLVVTV-DAQRIIMNAAAIYFMTKFRRR-VILISTTMLCVAVLLLISAYSYAKTSN 553
+N P L + DA AI+ + F RR +++ + + S A T
Sbjct: 299 LNSPFLAALILDAVNFGCTFGAIFVLEYFGRRGPLIVGGVWQSICFFIYASVGDRALTRP 358
Query: 552 LLPFDHPSIGAILLH---VHMFTIATGSVPLPMTISGEIFPLQFRSVSGALSAVFFSFHL 382
+H + GA+++ + +F+ A P I GE +P+++RS A++ F
Sbjct: 359 NGTSNHRA-GAVMIVFSCLFIFSFAQTWAPAAYVIVGESYPIRYRSKCAAVATASNWFWN 417
Query: 381 FITVKTYRYLRNSLGLHGTYLIYAAIVTYCLVVSWIFLPETKDRTLQEI 235
F+ ++ NS+G Y ++AA ++ ++F ETK TL+EI
Sbjct: 418 FMISFFTPFISNSIGFKYGY-VFAACNLCAAIIIFLFAKETKGLTLEEI 465
>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 547
Score = 46.8 bits (106), Expect = 4e-06
Identities = 52/229 (22%), Positives = 97/229 (42%), Gaps = 6/229 (2%)
Frame = -3
Query: 846 VLQTDIRNGSRLYFR*MGQGSISFPPYIVEVAEALVDKDKMNVPLL-VVTVDAQRIIMNA 670
+L DIR + L M ++ Y + + MN P L + +DA
Sbjct: 257 ILGADIRYRTFLGLGVMSLQQLTGDNYYFYYGFEVFEGTGMNSPYLSALILDAVNFGCTF 316
Query: 669 AAIYFMTKFRRRV-ILISTTMLCVAVLLLISAYSYAKTSNLLPFDHPSIGAILLH---VH 502
++ + F RR+ ++I + + + + A T +H + GA+++ +
Sbjct: 317 GGLFVLEFFGRRMPLIIGGVWQSITFFIYAAVGNRALTRKNGTSNHRA-GAVMIVFSCLF 375
Query: 501 MFTIATGSVPLPMTISGEIFPLQFRSVSGALSAVFFSFHLFITVKTYRYLRNSLGLHGTY 322
+F+ A P I GE +P+++RS A++ F+ ++ +S+G Y
Sbjct: 376 IFSFAQTWGPAAYVIVGESYPIRYRSKCAAVATTGNWLWGFLITFFTPFISDSIGFKYGY 435
Query: 321 LIYAAIVTYCLVVSWIFLPETKDRTLQEIEDEF-RGGPPTRDRDENTAE 178
I+AA + ++F ETK TL+EI + + G P R EN +
Sbjct: 436 -IFAACNLCAACIIFLFAHETKGLTLEEINELYLSGAKPWMPRPENLGQ 483
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 45.6 bits (103), Expect = 9e-06
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 5/185 (2%)
Frame = -3
Query: 726 MNVPLL-VVTVDAQRIIMNAAAIYFMTKFRRRVILISTTMLCVAVLLLISAYSYAKTSNL 550
MN P L + +DA ++ + F RR+ LI + + +A +
Sbjct: 297 MNSPYLSALILDAVNFGCTFGGLFVLEFFGRRMPLIIGALWQSITFFIYAAVGNRALTRK 356
Query: 549 LPFDHPSIGAILLH---VHMFTIATGSVPLPMTISGEIFPLQFRSVSGALSAVFFSFHLF 379
+ GA+++ + +F+ A P I GE +P+++RS A++ F
Sbjct: 357 NGTSNHRAGAVMIVFSCLFIFSFAQTWGPAAYVIVGESYPIRYRSKCAAVATTGNWLWGF 416
Query: 378 ITVKTYRYLRNSLGLHGTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIEDEF-RGGPPTR 202
+ ++ NS+G Y I+AA + ++F ETK TL+EI + + G P
Sbjct: 417 LISFFTPFITNSIGFKYGY-IFAACNLCAACIIFLFAHETKGLTLEEINELYISGAKPWM 475
Query: 201 DRDEN 187
R +N
Sbjct: 476 PRPKN 480
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 44.0 bits (99), Expect = 3e-05
Identities = 40/168 (23%), Positives = 75/168 (44%), Gaps = 4/168 (2%)
Frame = -3
Query: 726 MNVPLLVVTV-DAQRIIMNAAAIYFMTKFRRRVILISTTMLCVAVLLLISAYSYAKTSNL 550
M+ P L + DA AI+ + F RR LI + + +A +
Sbjct: 267 MDSPYLAALIPDAVNCGCTFGAIFVLEFFGRRSPLIVGGIWQYICFFIYAAVGDRALYHK 326
Query: 549 LPFDHPSIGAILLH---VHMFTIATGSVPLPMTISGEIFPLQFRSVSGALSAVFFSFHLF 379
+ GA+++ + +F+ + P I GE +P+++RS A++ F F
Sbjct: 327 NGTSNHRAGAVMIVFSCLFIFSFSQTWAPAAYVIVGESYPVRYRSKCAAVATSANWFWNF 386
Query: 378 ITVKTYRYLRNSLGLHGTYLIYAAIVTYCLVVSWIFLPETKDRTLQEI 235
+ ++ NS+G Y+ + +T ++ ++F+ ETK RTL+EI
Sbjct: 387 LISFFTPFITNSIGFKYGYIFASCNLTGAAII-FLFVHETKGRTLEEI 433
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 42.3 bits (95), Expect = 8e-05
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Frame = -3
Query: 501 MFTIATGSVPLPMTISGEIFPLQFRSVSGALSAVFFSFHLFITVKTYRYLRNSLGLHGTY 322
+F+ A P I GE +P+++RS A++ F+ ++ NS+G Y
Sbjct: 376 IFSFAQTWGPAAYVIVGESYPIRYRSKCAAVATTSNWLWNFLISFFTPFITNSIGFKYGY 435
Query: 321 LIYAAIVTYCLVVSWIFLPETKDRTLQEIEDEF-RGGPPTRDRDENTAEI 175
I+A+ +V+++F E+K TL+EI + + P R +N +E+
Sbjct: 436 -IFASCNLCASIVTFLFAHESKGLTLEEINELYLSDAKPWMSRPKNLSEM 484
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 38.3 bits (85), Expect = 0.001
Identities = 25/101 (24%), Positives = 47/101 (46%)
Frame = -3
Query: 531 SIGAILLHVHMFTIATGSVPLPMTISGEIFPLQFRSVSGALSAVFFSFHLFITVKTYRYL 352
S+ + + +F+ P+ I GE FP+++RS +++ F+ ++
Sbjct: 366 SVMIVFSCLFLFSYCCSWGPMGWVIVGETFPIRYRSKCASVATSGNWLGNFMISFFTPFI 425
Query: 351 RNSLGLHGTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIED 229
N++G Y IYA I + + + ETK TL+E+ D
Sbjct: 426 NNAIGFKLGY-IYACINLFSSFMIFFLAKETKGLTLEEVND 465
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 37.1 bits (82), Expect = 0.003
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Frame = -3
Query: 540 DHPSIGAILLH---VHMFTIATGSVPLPMTISGEIFPLQFRSVSGALSAVFFSFHLFITV 370
DH + GA+++ + +F+ P+ I GE FP+++RS A++ F+
Sbjct: 361 DHRA-GAVMIVFSCLFLFSYCCSWGPMGWVIVGETFPIRYRSKCAAVATSGNWLGNFMVS 419
Query: 369 KTYRYLRNSLGLHGTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIED 229
++ NS+G Y IYA I ++ ETK TL+E+ +
Sbjct: 420 FFTPFISNSIGFKLGY-IYACINMTSAFQIFLMAKETKGLTLEEVNE 465
>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 33.5 bits (73), Expect = 0.039
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = -3
Query: 450 EIFPLQFRSVSGALSAVFFSFHLFITVKTYRYLRNSLGLHGTYLIYAAIVTYCLVVSWIF 271
E+FP + R + LSA + + +L + +G I+ + + + +
Sbjct: 463 EVFPARVRGTAHGLSAALGKCGAILASLLFNFLTSVIGYGNVMWIFCGCM-WGAIFFTLL 521
Query: 270 LPETKDRTLQEI--EDEFRGG 214
LPETK R EI E+ RGG
Sbjct: 522 LPETKMRDADEIDREEVLRGG 542
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/50 (22%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -3
Query: 411 LSAVFFSFHLFITVKTYRYLRNSLGLHGTY---LIYAAIVTYCLVVSWIF 271
L + +F LF+++ YR+ + L ++ + LI+ + LV++ ++
Sbjct: 531 LGVIHMTFCLFLSLSNYRFFKRKLDIYAVFVPSLIFLEAIFGYLVITIVY 580
>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 26.2 bits (55), Expect = 6.0
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = -3
Query: 633 VILISTTMLCVAVLLLISAYSYAKTSNLLPFDHPSIGAILLHVHMFTIATGSVPLPMTIS 454
++ ++++ V + L YS + LLP P ++L I T LP ++S
Sbjct: 247 LLTVTSSTQTVHIFRLKEVYSNLERQGLLPSSPPPKESLLRRSSRSLIGTVGGYLPQSVS 306
Query: 453 GEIFP 439
G + P
Sbjct: 307 GMLDP 311
>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 7.9
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Frame = -3
Query: 804 R*MGQGSISFPPYIVEVAEALVD--KDKMNVPLLV--------VTVDAQRIIMNAAAIYF 655
R MG G +S P+++ + EA + N +++ T A R + A +
Sbjct: 329 RLMGNGDVSVSPFVLAIQEANIKGLPSVFNAVIIISVVSVTNSTTYTAARTLQGMATLKQ 388
Query: 654 MTKFRRRVILISTTMLCVAVLLLISAYSY 568
KF + ++ + V+LL ++Y
Sbjct: 389 APKFFSYTDRVGRPLIAMVVVLLFGFFAY 417
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,514,605
Number of Sequences: 5004
Number of extensions: 74465
Number of successful extensions: 219
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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