Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18e21
         (857 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.7  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   4.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.3  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -2

Query: 637 ESNSDKYNNALRRCFASYFSLQLRQNVKLVTIRSSVHRRDFVTRSYVHNS 488
           E++SD+   ++ RC++   +    +++ L T +   H+   VTR Y  +S
Sbjct: 202 ETDSDRRKGSIARCWSLDSTAASDEDISLTTHQQKRHKLR-VTRCYSSDS 250


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 661 IFYDKI*TESNSDK 620
           IFY+KI T  NSDK
Sbjct: 576 IFYEKIETSLNSDK 589


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 661 IFYDKI*TESNSDK 620
           IFY+KI T  NSDK
Sbjct: 576 IFYEKIETSLNSDK 589


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 845 FYKPIFVMVHVY 810
           FY P+FVM+ VY
Sbjct: 211 FYIPLFVMIQVY 222


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
          finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 54 VYCILNTAIVHVYT 13
          VYC  N+ + H+YT
Sbjct: 44 VYCSRNSLMTHIYT 57


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 845 FYKPIFVMVHVY 810
           FY P+FVMV  Y
Sbjct: 215 FYLPLFVMVFTY 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,599
Number of Sequences: 438
Number of extensions: 5376
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)