Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18e19
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    29   0.53 
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    29   0.70 
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    28   1.6  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   2.1  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    26   5.0  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    26   6.6  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   6.6  

>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 518 AKTDSFSILGASFRHVGSASA*RTLYVENAPLNLDKWFFDKPAVW 652
           + +D FSILGA FR + S +  +  ++ +    + K F D   +W
Sbjct: 528 SSSDLFSILGAHFRFICSLNFGKISFISHEFYRVSKRFLDILLIW 572


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = -1

Query: 528 SVLALPEEARHQKALDSTIVVPTKADL--SPILGVPEEHIKTRRVRIYQPAKNAMQSGTN 355
           S L  P+E  HQK L    +      L  SP  G+ E++  T     ++P   A++SG  
Sbjct: 250 SFLQCPDECYHQKRLSLIYLTTCLLILGKSPTKGLLEKYKLTAA---FEPLIKALKSGDI 306

Query: 354 NIHHWEMEFDTRQRW 310
                 +E ++R++W
Sbjct: 307 KSFRLSLEDNSRRKW 321


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 492 KALDSTIVVPTKADLSPILGVPEEHIKTRRVRIYQP 385
           KA +    V  K DL  +LG  + ++KT ++R Y+P
Sbjct: 300 KATEKREWVKEKIDLESLLGTIQTNLKTYQLRKYEP 335


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 151 AFRFEILLGFRNINVPHPSIFLTMLNCFIRRSELNFDIGQ 270
           A RF ILL  +     +  + L ++N  I    LNF +G+
Sbjct: 692 AHRFRILLSSKEWEEDNKKLTLNIVNSVIPHDNLNFQVGR 731


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 301 RIFPTLTSVKFHFPMMDIICTTLHCILRRLINTYTASL 414
           +I P L+SV   +PM ++  + L CI +   N  T S+
Sbjct: 219 KIGPNLSSVCVQYPMPELSRSGLDCIFQLCPNATTISI 256


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +3

Query: 288 SSPSEDFPNVDECQIPFPNDGYYLYHSALHSSQVDKYVHGES*YVLLGLLKWG*DLPSLA 467
           +S ++D P V +  IPF  DG   Y   L+  Q+ +++  +    L  ++      PSL 
Sbjct: 173 ASNADDVPVVWKV-IPFGEDGQAQYADVLNEVQISQWIKVDGFANLHQVVVVKGTYPSLL 231

Query: 468 LQ*WNPVL 491
           L+ W+  L
Sbjct: 232 LEEWDRYL 239


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = -3

Query: 148  WVKFRLESSYSSLH*VKR*FKNVNFIILNNVMKK*TLISVILLMLIKII 2
            W  + ++ S S L      FK+  F++L+  +KK  L   +    +K++
Sbjct: 1127 WEAYMIDISSSQLKRKSTEFKDCPFVVLDPFLKKKNLTKALTQKSVKVV 1175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,243,645
Number of Sequences: 5004
Number of extensions: 74456
Number of successful extensions: 201
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)