Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18e19
         (747 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC005270-1|AAH05270.1|  175|Homo sapiens NADH dehydrogenase (ubi...   168   2e-41
AF020351-1|AAB87865.1|  175|Homo sapiens NADH:ubiquinone oxidore...   168   2e-41
DQ100870-1|AAZ08876.1|  113|Homo sapiens immunoglobulin heavy ch...    31   4.4  

>BC005270-1|AAH05270.1|  175|Homo sapiens NADH dehydrogenase
           (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q
           reductas protein.
          Length = 175

 Score =  168 bits (409), Expect = 2e-41
 Identities = 76/134 (56%), Positives = 96/134 (71%)
 Frame = -1

Query: 504 ARHQKALDSTIVVPTKADLSPILGVPEEHIKTRRVRIYQPAKNAMQSGTNNIHHWEMEFD 325
           A+ Q      I V  K D++ + GVPEEHIKTR+VRI+ PA+N MQSG NN   W+MEFD
Sbjct: 43  AQDQTQDTQLITVDEKLDITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFD 102

Query: 324 TRQRWENPLMGWTSSGDPLSNVKIQFRSPDEAIEHCEKNGWMWYIDVPKTEKDFKPKSYG 145
           TR+RWENPLMGW S+ DPLSN+ + F + ++A+   EKNGW + I+  K  K  K KSYG
Sbjct: 103 TRERWENPLMGWASTADPLSNMVLTFSTKEDAVSFAEKNGWSYDIEERKVPKP-KSKSYG 161

Query: 144 LNFAWNRRTRVSTK 103
            NF+WN+RTRVSTK
Sbjct: 162 ANFSWNKRTRVSTK 175


>AF020351-1|AAB87865.1|  175|Homo sapiens NADH:ubiquinone
           oxidoreductase 18 kDa IP subunit protein.
          Length = 175

 Score =  168 bits (409), Expect = 2e-41
 Identities = 76/134 (56%), Positives = 96/134 (71%)
 Frame = -1

Query: 504 ARHQKALDSTIVVPTKADLSPILGVPEEHIKTRRVRIYQPAKNAMQSGTNNIHHWEMEFD 325
           A+ Q      I V  K D++ + GVPEEHIKTR+VRI+ PA+N MQSG NN   W+MEFD
Sbjct: 43  AQDQTQDTQLITVDEKLDITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFD 102

Query: 324 TRQRWENPLMGWTSSGDPLSNVKIQFRSPDEAIEHCEKNGWMWYIDVPKTEKDFKPKSYG 145
           TR+RWENPLMGW S+ DPLSN+ + F + ++A+   EKNGW + I+  K  K  K KSYG
Sbjct: 103 TRERWENPLMGWASTADPLSNMVLTFSTKEDAVSFAEKNGWSYDIEERKVPKP-KSKSYG 161

Query: 144 LNFAWNRRTRVSTK 103
            NF+WN+RTRVSTK
Sbjct: 162 ANFSWNKRTRVSTK 175


>DQ100870-1|AAZ08876.1|  113|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 113

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 246 RSPDEAIEHCEKNGWMWYIDV 184
           R+ D A+ +C + GW WY D+
Sbjct: 85  RAGDTAVYYCARGGWYWYFDL 105


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,710,840
Number of Sequences: 237096
Number of extensions: 2515074
Number of successful extensions: 8782
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8780
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8959138240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)