Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18e19
(747 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006834-7|AAF40003.2| 176|Caenorhabditis elegans Lipid deplete... 132 3e-31
AL132943-3|CAB81974.1| 345|Caenorhabditis elegans Hypothetical ... 30 1.5
Z81564-4|CAB04574.1| 432|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z50863-5|CAA90738.2| 746|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z50863-4|CAL36493.1| 412|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z49153-2|CAA89023.2| 746|Caenorhabditis elegans Hypothetical pr... 29 4.6
AC006790-11|AAF60729.1| 252|Caenorhabditis elegans Hypothetical... 28 6.1
U41033-6|AAA82378.1| 859|Caenorhabditis elegans Hypothetical pr... 28 8.1
>AC006834-7|AAF40003.2| 176|Caenorhabditis elegans Lipid depleted
protein 5 protein.
Length = 176
Score = 132 bits (318), Expect = 3e-31
Identities = 73/183 (39%), Positives = 101/183 (55%), Gaps = 2/183 (1%)
Frame = -1
Query: 645 AGLSKNHLSRFKGAFSTYNVRYADADPTCRKEAPKIENESVLALPEEARHQKALDSTIVV 466
AG S+ LS AF + + T +A K+E +L P + T V
Sbjct: 4 AGASRC-LSAGNTAFRCLSTGKDNLPVTRSHDAKKVELNDILDKPSQ--------KTPVK 54
Query: 465 PTKADLSPILGVPEEHIKTRRVRIYQPAKNAMQSGTNNIHHWEMEFDTRQRWENPLMGWT 286
+ + I GVP +H R RI++PA+ QS N W +E D RQRWENPLMGW+
Sbjct: 55 VSSDETMDIGGVPLDHQDARTARIFRPARETTQSAWGNTKSWTIELDNRQRWENPLMGWS 114
Query: 285 SSGDPLSNV--KIQFRSPDEAIEHCEKNGWMWYIDVPKTEKDFKPKSYGLNFAWNRRTRV 112
+ DPLSNV ++F + ++AI CEKN W + ++ P E+ KPK+YG NF+WNRRTR+
Sbjct: 115 GTADPLSNVGMDLKFATKEDAIAFCEKNRWEFDVEEPH-ERKIKPKNYGQNFSWNRRTRI 173
Query: 111 STK 103
TK
Sbjct: 174 GTK 176
>AL132943-3|CAB81974.1| 345|Caenorhabditis elegans Hypothetical
protein Y116F11B.6 protein.
Length = 345
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/90 (22%), Positives = 41/90 (45%)
Frame = -3
Query: 568 SNMPKGST*N*KRIRFGLARRSSASKSTGFHYCSANEGRSQPHFRSPRRTY*DSPCTYLS 389
S+ +GS N + I F S + H + + +PH+ P + D+ C Y
Sbjct: 6 SSHVQGSAQNQQLIHFDELAAFLESSAQAPHILNGLQAGDKPHYPGPVPIFYDNNCNYDE 65
Query: 388 TCEECNAEWYK*YPSLGNGI*HSSTLGKSS 299
++ N++ + +P + +G H+S + K +
Sbjct: 66 VFQQQNSQ--ELFPLIRDGGLHNSNMNKEN 93
>Z81564-4|CAB04574.1| 432|Caenorhabditis elegans Hypothetical
protein K05C4.4 protein.
Length = 432
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -1
Query: 654 CQTAGLSKNHLSRFKGAFSTYNVRYADADPTCRKEAPKIENESVLALPE 508
C GLS N++ F +F+TY + PT ++ K E + LAL E
Sbjct: 351 CTVLGLSNNNIKEFARSFATY---FFKRIPTLKRIDDKPEKMAPLALEE 396
>Z50863-5|CAA90738.2| 746|Caenorhabditis elegans Hypothetical
protein C14H10.2a protein.
Length = 746
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 417 IKTRRVRIYQPAKNAMQSGTNNIHHWEMEFDTRQRWEN 304
IKT R Y+ AK +++ IH +E+ ++ ++ EN
Sbjct: 572 IKTELERRYEEAKYRLKNALEKIHDYELLYEAAKKSEN 609
>Z50863-4|CAL36493.1| 412|Caenorhabditis elegans Hypothetical
protein C14H10.2b protein.
Length = 412
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 417 IKTRRVRIYQPAKNAMQSGTNNIHHWEMEFDTRQRWEN 304
IKT R Y+ AK +++ IH +E+ ++ ++ EN
Sbjct: 238 IKTELERRYEEAKYRLKNALEKIHDYELLYEAAKKSEN 275
>Z49153-2|CAA89023.2| 746|Caenorhabditis elegans Hypothetical
protein C14H10.2a protein.
Length = 746
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 417 IKTRRVRIYQPAKNAMQSGTNNIHHWEMEFDTRQRWEN 304
IKT R Y+ AK +++ IH +E+ ++ ++ EN
Sbjct: 572 IKTELERRYEEAKYRLKNALEKIHDYELLYEAAKKSEN 609
>AC006790-11|AAF60729.1| 252|Caenorhabditis elegans Hypothetical
protein Y49F6B.2 protein.
Length = 252
Score = 28.3 bits (60), Expect = 6.1
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Frame = -1
Query: 483 DSTIVVPTKADLS--PILGVPEEHIKTRRVRIYQPAKNAMQS----GTNNIHHWEMEFDT 322
DS +P K P+ ++ + R VR P + A ++ GT+ + +EM+ D
Sbjct: 24 DSDEEIPKKKQKQQKPVAEEFDDFVVDRAVREEAPKEGAFEAVDLLGTSYLEPYEMDKDL 83
Query: 321 RQRWENPLMGWTSSGDPLSNVKIQFRSPDEAIEHCEK---NGWMWYIDVPKTE 172
++ E ++G GD ++ R+ ++ E+ G W+ ++P TE
Sbjct: 84 QELLEKSVVGPKFEGDHQPQNRLLGRNAAARLKKSEREKTKGSAWF-NLPATE 135
>U41033-6|AAA82378.1| 859|Caenorhabditis elegans Hypothetical
protein K09E3.7 protein.
Length = 859
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -1
Query: 198 WYIDVPKTEKDFKPKSYGLNFAWNRRTRVSTK*NGS 91
W D+P+ E D + S +F NR+T ++++ + S
Sbjct: 307 WTEDIPEIELDCEDTSLSFSFLTNRKTTIASEMDAS 342
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,733,428
Number of Sequences: 27780
Number of extensions: 410635
Number of successful extensions: 1188
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -