Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18e09
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi...    27   3.3  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   4.4  
SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.8  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    26   5.8  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    26   5.8  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    26   7.7  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    26   7.7  

>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 377

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 591 CNIMVKEKNGACFEVLPIDFQILHYGCPINDLIY 490
           CN    ++ G   E     +++L Y  P N+LIY
Sbjct: 180 CNARALDETGQFLEAAKCYYRVLQYKVPGNELIY 213


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 21/72 (29%), Positives = 30/72 (41%)
 Frame = -3

Query: 576 KEKNGACFEVLPIDFQILHYGCPINDLIYFIFTGTDQAFRKEHMENLKDLYYETLKNFVS 397
           K+  GA  + +  D+ +  YG  +   I       D A  K+   N+K  Y E  K  V 
Sbjct: 36  KQDKGAALKSI-YDYHVRPYGTVVQSQIAKASPIVDAA--KQATVNVKSYYDEHAKPKVE 92

Query: 396 NFGVRLTEVISK 361
           N    + EVI K
Sbjct: 93  NIRYEVNEVIDK 104


>SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
 Frame = -3

Query: 384 RLTEVISKGEFDE-----LFKSKLDFGLMINCFYV 295
           +LTE IS  E  E     LF S   FG ++NCF++
Sbjct: 57  KLTEAISFTEKCEKYNISLFDSTFVFGYIVNCFFI 91


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 679 ISIFLSFIIVQKFY*RFRNVSHEIIPSFTENKRVFQALEYLIENISDAAF 828
           + I +  ++   FY  F  +   +IP F ENK  F A E LI +   A F
Sbjct: 361 MGILVGSVLTVAFY--FIYLRKVMIPKFVENKGKFPAEEILIISFPAAFF 408


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
            polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 768  FGEAWNDFVGNVSKSSIKLLDDDKREKYGDK 676
            F E +  F+  VSK +IK  D+D + K+G+K
Sbjct: 1063 FEERYKGFL--VSKKAIKANDEDLKAKFGNK 1091


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 148 IQSLQIAPFYKIVDYLSKSNPEPLIRLEAYIT*GLSDVRHIVLGREHK 291
           + SL IAPF     +LSK   +  I L  ++   ++ + H+VL   HK
Sbjct: 353 LSSLVIAPFVFFSTFLSKWLEDRQIMLYGFMMGIVALIVHLVLDAVHK 400


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 456 KEHMENLKDLYYETLKNFVSNFGVRLTEVISKGEFDELFKSKL 328
           K  ++N KD YY   ++  +  G++  +V  K   + L+ SKL
Sbjct: 611 KSFVDNFKDRYYMYKQDIDNVVGLKDFKVYLKTTLNRLYNSKL 653


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,317,967
Number of Sequences: 5004
Number of extensions: 68499
Number of successful extensions: 225
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)