Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18e09
(842 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0203 - 19241442-19241710,19241845-19242055,19242602-192431... 31 1.1
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302... 31 1.5
06_03_1288 + 29014144-29014376,29015192-29015771,29015929-290163... 31 1.5
11_06_0295 + 22033367-22034947,22035030-22035137,22035230-220353... 30 2.0
12_01_0957 + 9531045-9531069,9531904-9531971,9532659-9532882,953... 29 3.5
05_06_0207 + 26377836-26378201,26379785-26379906,26380025-263802... 29 3.5
01_01_0285 - 2360799-2362631 29 4.6
05_05_0240 + 23548408-23549408,23549882-23549980,23550282-235503... 28 8.1
04_04_0706 + 27419215-27419371,27419521-27419734,27419818-274199... 28 8.1
>01_05_0203 -
19241442-19241710,19241845-19242055,19242602-19243181,
19243204-19244189
Length = 681
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 699 KREKYGDKIMNIVHKYEDYISDTKHFSTLCHGDYKNCNIMV 577
++ K+G +IM+ H E+Y F + HG +K N +
Sbjct: 588 RKSKHGTRIMHPAHPIENYCGGDMDFIEMAHGTHKLTNARI 628
>06_03_1404 -
29928792-29929040,29929147-29929551,29930130-29930280,
29930363-29930501,29930578-29930743,29930826-29931041,
29931142-29931323,29931412-29931538,29931974-29932112,
29932227-29932353,29932501-29932612,29932704-29932784,
29933330-29933483,29933569-29933689,29934003-29934045,
29934356-29934460
Length = 838
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = -3
Query: 762 EAWNDFVGNVSKSSIKLLDDDKREKYGDKIMNIVHKYEDYIS 637
+ WN+ +G ++ + L D+ K DK+ ++V KY ++I+
Sbjct: 264 DTWNEPLGRGTEIRLHLRDEAKEYVEEDKLKDLVKKYSEFIN 305
>06_03_1288 +
29014144-29014376,29015192-29015771,29015929-29016320,
29016636-29016663,29017207-29017417,29017551-29017819
Length = 570
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = -3
Query: 699 KREKYGDKIMNIVHKYEDYISDTKHFSTLCHGDYKNCNIMV 577
++ K+G +IM+ H E+Y F+ + HG ++ N +
Sbjct: 477 RKSKHGTRIMHPAHPIENYCGGDMDFTEMAHGTHELTNARI 517
>11_06_0295 + 22033367-22034947,22035030-22035137,22035230-22035370,
22035576-22035625,22036100-22036168,22036649-22036781,
22037634-22037747,22037826-22038038,22038387-22038500,
22038768-22038900,22039304-22039416,22040204-22040284,
22040397-22040483
Length = 978
Score = 30.3 bits (65), Expect = 2.0
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Frame = -3
Query: 543 PIDFQILHYGCPINDLIYFIFTGTDQAFRKEHMENLKDLYYETLKNFVSNFGVRLTEVIS 364
P FQ+ H G +D+ Y IF+ + + +H E L +LKN + V + +
Sbjct: 749 PASFQLRHNGSCFSDIFYDIFSAWE---KNDHHETYYSL--TSLKNNLCQ-TVNVRNIFE 802
Query: 363 KGEFDELFKSK-LDFGL-MINCFYVPFMFSAENDVP-DVTEPLGDISFKTDERF 211
K + F S LD L ++ P F N + V + D+ DERF
Sbjct: 803 KLRAGKYFASVILDLVLDELHVSEAPLHFYFNNKIQGQVIKSFADLPVAIDERF 856
>12_01_0957 +
9531045-9531069,9531904-9531971,9532659-9532882,
9533299-9533380,9533513-9533572,9533717-9533795,
9533935-9534082,9534237-9534312,9534603-9534776,
9535908-9536058,9536264-9536292,9536388-9536536,
9536652-9536754,9537043-9537098,9537209-9537332,
9537547-9537609,9537707-9537766,9537942-9538103,
9538262-9538332,9538500-9538593,9538675-9538811,
9538915-9538995,9539402-9539524,9539585-9539693
Length = 815
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 453 EHMENLKDLYYETLKNFVSNFGVRLTEVISKGEFDELF 340
EH+EN+ YY TL + NF ++++ G FDE F
Sbjct: 714 EHVENIGYHYYTTLIRWRDNFMANKDKILALG-FDEKF 750
>05_06_0207 +
26377836-26378201,26379785-26379906,26380025-26380220,
26380642-26380759,26380869-26380916,26380995-26381095,
26381178-26381285
Length = 352
Score = 29.5 bits (63), Expect = 3.5
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Frame = -3
Query: 750 DFVGNVSKSSIKLLDDDKREKYG-DKIMNIVHKYEDYISDTKHFSTLCHGDYKNCNIMVK 574
D + N K++ L D+ +++ D + N + E+ +S+ CH D + NIM+
Sbjct: 160 DRLRNWLKTAKNLCPSDEAKEFCLDSMENEITALENELSEDYQCVGFCHNDLQYGNIMID 219
Query: 573 EKNGACFEVLPIDFQILHYGCPINDLI-YFIFTGTDQAFRKEH-MENLKDLYYETLKNFV 400
E+ + ID++ +G D+ +F D K H ++ K + K FV
Sbjct: 220 EETKL---LTIIDYEYASFGPVAYDIANHFCEMAADYHSEKPHILDYTKYPDTDEQKQFV 276
Query: 399 SNF 391
++
Sbjct: 277 QSY 279
>01_01_0285 - 2360799-2362631
Length = 610
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 43 IIP*FNTDIKILSFVI--YVFLYSVYIYIFLFNIWKLIQSL 159
II FN D+ + VI Y+FL S + F+F+ W ++ +
Sbjct: 181 IIHGFNLDLLVTRLVIVWYIFLESYQFFTFIFSDWHKVKMM 221
>05_05_0240 +
23548408-23549408,23549882-23549980,23550282-23550354,
23550416-23550478
Length = 411
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -3
Query: 738 NVSKSSIKLLDDDKREKYGDKIMNIVHKYEDYISDTKHFSTLCHGDYKNCNIMVKE 571
NV+K+ KL D + K+ ++M I H + + + F+T +G C I+ +E
Sbjct: 113 NVAKALQKLDDYELILKFVRQVMEITHDRDPTVMNRIVFTTAKYGQIDKCLIIFEE 168
>04_04_0706 + 27419215-27419371,27419521-27419734,27419818-27419913,
27420006-27420123,27420211-27420384,27420633-27420803,
27420932-27420987,27421125-27421214,27421296-27421444,
27421640-27421722,27421830-27421958,27422063-27422137,
27422248-27422416,27422965-27423104,27423191-27423298,
27423603-27423783,27424445-27424542,27424639-27424728,
27424881-27425034,27425376-27425431,27425483-27425533,
27425651-27425732,27425821-27425995,27426748-27426823,
27426951-27427121,27427198-27427269,27427350-27427454,
27427948-27428037,27428703-27428908,27428989-27429190,
27429294-27429473,27429858-27429925,27430005-27430341,
27430428-27430637,27430765-27431448,27431537-27431940,
27432495-27432542,27432777-27433023,27433381-27433602,
27433796-27434026
Length = 2122
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -3
Query: 471 DQAFRKEHMENLKDLYYETLKNFVSNFGVRLTEVISKGEFDELFKSK 331
D+ + ++ +DL ++ KNF FGV+ T + D LF K
Sbjct: 1128 DKKMNSKRIKRKEDLNHDIFKNFDDLFGVKPTASVLVSLLDVLFLKK 1174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,314,273
Number of Sequences: 37544
Number of extensions: 371510
Number of successful extensions: 1000
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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