Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18e09
(842 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY358961-1|AAQ89320.1| 428|Homo sapiens POM121-like protein. 31 6.9
AL831940-1|CAD38592.1| 215|Homo sapiens hypothetical protein pr... 31 6.9
AK075148-1|BAC11434.1| 170|Homo sapiens protein ( Homo sapiens ... 31 6.9
AK074928-1|BAC11298.1| 356|Homo sapiens protein ( Homo sapiens ... 31 6.9
AK074907-1|BAC11283.1| 170|Homo sapiens protein ( Homo sapiens ... 31 6.9
AK022027-1|BAB13955.1| 234|Homo sapiens protein ( Homo sapiens ... 31 6.9
AK001440-1|BAA91692.1| 234|Homo sapiens protein ( Homo sapiens ... 31 6.9
AF346603-1|AAK29084.1| 476|Homo sapiens Sec61 alpha form 2 prot... 31 6.9
AF346602-1|AAK29083.1| 476|Homo sapiens Sec61 alpha form 1 prot... 31 6.9
AF084458-1|AAD39847.1| 476|Homo sapiens sec61 homolog protein. 31 6.9
>AY358961-1|AAQ89320.1| 428|Homo sapiens POM121-like protein.
Length = 428
Score = 30.7 bits (66), Expect = 6.9
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 587 ILWLKKRTEPASKFCQLTFKSSTT 516
+L LK+R PAS CQLT SS T
Sbjct: 132 LLGLKRRRGPASSHCQLTLSSSKT 155
>AL831940-1|CAD38592.1| 215|Homo sapiens hypothetical protein
protein.
Length = 215
Score = 30.7 bits (66), Expect = 6.9
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -3
Query: 768 FGEAWNDFVGNVSKSSIKLLDDDKREKYGDKIMNIVHKYEDYISDTKHFSTLCHG 604
F + W + G+ +K K L + + G + ++VH+ YI F LC G
Sbjct: 114 FSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIG 168
>AK075148-1|BAC11434.1| 170|Homo sapiens protein ( Homo sapiens
cDNA FLJ90667 fis, clone PLACE1005410, highly similar to
Protein transport protein Sec61 alpha subunitisoform 1.
).
Length = 170
Score = 30.7 bits (66), Expect = 6.9
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -3
Query: 768 FGEAWNDFVGNVSKSSIKLLDDDKREKYGDKIMNIVHKYEDYISDTKHFSTLCHG 604
F + W + G+ +K K L + + G + ++VH+ YI F LC G
Sbjct: 69 FSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIG 123
>AK074928-1|BAC11298.1| 356|Homo sapiens protein ( Homo sapiens
cDNA FLJ90447 fis, clone NT2RP3001240, highly similar to
Canis familiaris sec61 homologue mRNA. ).
Length = 356
Score = 30.7 bits (66), Expect = 6.9
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -3
Query: 768 FGEAWNDFVGNVSKSSIKLLDDDKREKYGDKIMNIVHKYEDYISDTKHFSTLCHG 604
F + W + G+ +K K L + + G + ++VH+ YI F LC G
Sbjct: 255 FSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIG 309
>AK074907-1|BAC11283.1| 170|Homo sapiens protein ( Homo sapiens
cDNA FLJ90426 fis, clone NT2RP3000460, highly similar to
Protein transport protein Sec61 alpha subunitisoform 1.
).
Length = 170
Score = 30.7 bits (66), Expect = 6.9
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -3
Query: 768 FGEAWNDFVGNVSKSSIKLLDDDKREKYGDKIMNIVHKYEDYISDTKHFSTLCHG 604
F + W + G+ +K K L + + G + ++VH+ YI F LC G
Sbjct: 69 FSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIG 123
>AK022027-1|BAB13955.1| 234|Homo sapiens protein ( Homo sapiens
cDNA FLJ11965 fis, clone HEMBB1001112, moderately
similar to Homo sapiens sec61 homolog mRNA. ).
Length = 234
Score = 30.7 bits (66), Expect = 6.9
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -3
Query: 768 FGEAWNDFVGNVSKSSIKLLDDDKREKYGDKIMNIVHKYEDYISDTKHFSTLCHG 604
F + W + G+ +K K L + + G + ++VH+ YI F LC G
Sbjct: 133 FSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIG 187
>AK001440-1|BAA91692.1| 234|Homo sapiens protein ( Homo sapiens
cDNA FLJ10578 fis, clone NT2RP2003433, highly similar to
PROTEIN TRANSPORT PROTEIN SEC61 ALPHA SUBUNIT. ).
Length = 234
Score = 30.7 bits (66), Expect = 6.9
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -3
Query: 768 FGEAWNDFVGNVSKSSIKLLDDDKREKYGDKIMNIVHKYEDYISDTKHFSTLCHG 604
F + W + G+ +K K L + + G + ++VH+ YI F LC G
Sbjct: 133 FSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIG 187
>AF346603-1|AAK29084.1| 476|Homo sapiens Sec61 alpha form 2
protein.
Length = 476
Score = 30.7 bits (66), Expect = 6.9
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -3
Query: 768 FGEAWNDFVGNVSKSSIKLLDDDKREKYGDKIMNIVHKYEDYISDTKHFSTLCHG 604
F + W + G+ +K K L + + G + ++VH+ YI F LC G
Sbjct: 375 FSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIG 429
>AF346602-1|AAK29083.1| 476|Homo sapiens Sec61 alpha form 1
protein.
Length = 476
Score = 30.7 bits (66), Expect = 6.9
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -3
Query: 768 FGEAWNDFVGNVSKSSIKLLDDDKREKYGDKIMNIVHKYEDYISDTKHFSTLCHG 604
F + W + G+ +K K L + + G + ++VH+ YI F LC G
Sbjct: 375 FSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIG 429
>AF084458-1|AAD39847.1| 476|Homo sapiens sec61 homolog protein.
Length = 476
Score = 30.7 bits (66), Expect = 6.9
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -3
Query: 768 FGEAWNDFVGNVSKSSIKLLDDDKREKYGDKIMNIVHKYEDYISDTKHFSTLCHG 604
F + W + G+ +K K L + + G + ++VH+ YI F LC G
Sbjct: 375 FSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIG 429
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,640,269
Number of Sequences: 237096
Number of extensions: 2060885
Number of successful extensions: 4315
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4315
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10649685938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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