Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18e07
         (252 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    24   2.7  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    23   4.7  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    23   6.2  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    23   6.2  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    23   8.2  

>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 249 LLQTQPMSTRLTIPQCVFKS 190
           ++ T  +S +LT+P+CV +S
Sbjct: 91  VIDTSHVSIKLTLPKCVLRS 110


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 13  REHGRQRCPVSISGVLSWLIKVISCFSGD 99
           RE G+Q C   +  + SW+  ++  F  D
Sbjct: 536 REVGQQPCSRLLGQIASWITSMLQIFGLD 564


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = -3

Query: 217 HNTAVCIQKLQK*GPKSNLTAG--VSYFRFPSNHVCRMDLD 101
           HNTA C   + K GP S    G  +    F  NH   + ++
Sbjct: 76  HNTAPCDWVIVKLGPSSGRVTGCEIDTTFFNGNHAPEVSVE 116


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 160 LNCFSGLIFATFEYTLRY 213
           LNC  G ++   E+ +RY
Sbjct: 214 LNCMHGFVYGKTEFHMRY 231


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 124 HVCRMDLDC 98
           HVC  DLDC
Sbjct: 176 HVCNQDLDC 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,017,393
Number of Sequences: 5004
Number of extensions: 17371
Number of successful extensions: 36
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)