Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18e07
         (252 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0326 - 24407201-24407374,24407397-24407460,24408266-244086...    29   0.39 
06_02_0222 + 13229330-13229501,13230175-13230275,13230381-132305...    27   1.6  
11_04_0334 - 16489768-16489796,16490588-16490936                       27   2.1  
03_04_0157 + 17791540-17791681,17792809-17792908,17793386-177934...    27   2.8  
08_02_0075 - 11953723-11956203,11958213-11958512                       26   4.8  
04_03_0051 + 10199702-10199839,10199869-10200642,10202481-102030...    25   6.4  

>04_04_0326 -
           24407201-24407374,24407397-24407460,24408266-24408689,
           24408885-24409057,24409178-24409275,24409723-24409853,
           24410053-24410174,24411091-24411245,24411976-24412081,
           24412328-24412419,24412499-24412620,24413444-24413544,
           24413636-24413849,24414173-24414311,24415228-24415584
          Length = 823

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +1

Query: 16  EHGRQRCPVSISGVLSWLIKVISCFSGDN 102
           +H  +R  +++  +LSW++ V+ CF+G +
Sbjct: 171 DHVSKRALIALFLILSWVVVVVQCFTGSD 199


>06_02_0222 +
           13229330-13229501,13230175-13230275,13230381-13230574,
           13232600-13233068
          Length = 311

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 34  CPVSISGVLSWLIKVISCFSGDNRDPFCTRDC*ESE 141
           CP S SG  S      S  SGD  DP C + C  S+
Sbjct: 225 CPGSGSGSSSSFSSSSSSTSGDAEDPACAQRCATSD 260


>11_04_0334 - 16489768-16489796,16490588-16490936
          Length = 125

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +2

Query: 206 CGIVRRVDIGCV 241
           CG VRRVD+GC+
Sbjct: 70  CGAVRRVDVGCL 81


>03_04_0157 +
           17791540-17791681,17792809-17792908,17793386-17793477,
           17793562-17793620,17794135-17795637,17796478-17796720,
           17796831-17797145,17797571-17797573,17798399-17798638,
           17798975-17799259,17799335-17799556,17800105-17800266,
           17800411-17800545,17802452-17802688,17802787-17802960,
           17803692-17803934
          Length = 1384

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 141 FAFLAITCA-EWISIVARETRDDFYKPAKNSAY*HWTSLPSVLTATE 4
           FA   +TC  + + +V  +TRD+  K A N     ++ LP++L+  E
Sbjct: 703 FASDVVTCVGQIVGLVVADTRDNA-KAAANKVNIEYSELPAILSIEE 748


>08_02_0075 - 11953723-11956203,11958213-11958512
          Length = 926

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 213 IPQCVFKSCKNKARKAI*RPEYLTFAFLAITCAEW 109
           IP+C FKS KN         +YLT  FL +    W
Sbjct: 266 IPECEFKSAKNLTVLQRGINKYLTKRFLLVLDDMW 300


>04_03_0051 +
           10199702-10199839,10199869-10200642,10202481-10203077,
           10237046-10237159
          Length = 540

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 80  SLVSLATIEIHSAHVIARKAKVR 148
           +L  +AT+E+ SAH + R A VR
Sbjct: 123 NLRRIATVEVFSAHRLLRSADVR 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,419,282
Number of Sequences: 37544
Number of extensions: 105547
Number of successful extensions: 199
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 14,793,348
effective HSP length: 62
effective length of database: 12,465,620
effective search space used: 261778020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)