Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18e07
         (252 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC018437-1|AAH18437.1|  250|Homo sapiens SEC22 vesicle trafficki...    27   8.3  
AY869727-1|AAW65947.1|  246|Homo sapiens immunoglobulin gamma he...    27   8.3  
AF039568-1|AAD02171.1|  250|Homo sapiens vesicle trafficking pro...    27   8.3  

>BC018437-1|AAH18437.1|  250|Homo sapiens SEC22 vesicle trafficking
           protein homolog C (S. cerevisiae) protein.
          Length = 250

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 16  EHGRQRCPVSISGVLSWLIKVISCFSGDNRDPFCTRD 126
           EH  Q     I  +L++L+  ++C   D R  FC  D
Sbjct: 211 EHSLQVAHEEIGNILAFLVPFVACIFQDPRSWFCWLD 247


>AY869727-1|AAW65947.1|  246|Homo sapiens immunoglobulin gamma
          heavy chain 3 protein.
          Length = 246

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 65 QLRTPLIDTGHLCLPC 18
          +L+TPL DT H C PC
Sbjct: 13 ELKTPLGDTTHTCPPC 28


>AF039568-1|AAD02171.1|  250|Homo sapiens vesicle trafficking
           protein protein.
          Length = 250

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 16  EHGRQRCPVSISGVLSWLIKVISCFSGDNRDPFCTRD 126
           EH  Q     I  +L++L+  ++C   D R  FC  D
Sbjct: 211 EHSLQVAHEEIGNILAFLVPFVACIFQDPRSWFCWLD 247


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,419,177
Number of Sequences: 237096
Number of extensions: 633393
Number of successful extensions: 1237
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 76,859,062
effective HSP length: 61
effective length of database: 62,396,206
effective search space used: 1372716532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)