Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18e07
         (252 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   1.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   2.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   2.4  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    19   7.3  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    19   7.3  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 1.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 135 FLAITCAEWISIVARETRDDFYKPAKN 55
           FLAI    W + ++R  R ++Y    N
Sbjct: 435 FLAINVFYWFAYLSRSERINYYNVNSN 461



 Score = 19.0 bits (37), Expect = 9.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 69  KPAKNSAY*HW 37
           +P+KN A  HW
Sbjct: 375 EPSKNPAMGHW 385


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 2.4
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -1

Query: 201 VFKSCKNKARKA 166
           +FK+ +N+ARKA
Sbjct: 366 IFKALRNRARKA 377


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 2.4
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -1

Query: 153 EYLTFAFLAITCAEWISI 100
           +YL F  + +T + WI++
Sbjct: 314 KYLLFTMILVTLSIWITV 331


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
          protein.
          Length = 157

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 35 HLCLPCSRL 9
          HLCLP  R+
Sbjct: 45 HLCLPAPRI 53


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
          protein.
          Length = 128

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 35 HLCLPCSRL 9
          HLCLP  R+
Sbjct: 45 HLCLPAPRI 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,704
Number of Sequences: 438
Number of extensions: 1049
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4527252
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)