Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18e06
         (297 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0150 + 27025208-27025663                                         29   0.49 
01_06_0886 + 32725504-32725824,32725905-32726658,32727911-327280...    27   2.0  
05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468     27   2.6  
09_04_0037 + 13992103-13992624,13993001-13993180,13993423-139936...    27   3.5  
07_03_0394 - 17633753-17636788                                         26   4.6  
02_05_0587 + 30162806-30163183,30163315-30163478,30163571-301636...    26   6.0  

>01_06_0150 + 27025208-27025663
          Length = 151

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 273 TAVVFVTIAFFIHFSLFKLVFTMPKVVKSAGREIILKAK 157
           T ++F+T++FF  FSL   +F   K+   A R +++  K
Sbjct: 2   TLLLFLTLSFFSFFSLSLCIFINEKLRTGASRSMVVPKK 40


>01_06_0886 +
           32725504-32725824,32725905-32726658,32727911-32728033,
           32729477-32729535,32731427-32731732,32732006-32732236,
           32732332-32732484,32732567-32732836
          Length = 738

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 40  GKNHITGIPTKYLSWPLLS-YEHCLLISKPPDSSVLLHK 153
           G N    I  + LSWPL S Y  C+   +P +S+   +K
Sbjct: 370 GPNGSDPIADRQLSWPLASKYSWCIYKRRPDESAASANK 408


>05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468
          Length = 898

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 120 KTP*FFCSASQNPSPSILFLDQHF 191
           KTP F C+  Q PS +  +LD  F
Sbjct: 826 KTPLFACTVGQKPSKARFYLDDTF 849


>09_04_0037 +
           13992103-13992624,13993001-13993180,13993423-13993691,
           13994120-13995773
          Length = 874

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -1

Query: 297 GYQVLLSSTAVVFVTIAFFIHFSL 226
           GY V++++TA+ F+T  FF+  +L
Sbjct: 739 GYAVVIATTALFFLTCGFFLKRTL 762


>07_03_0394 - 17633753-17636788
          Length = 1011

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 216 VFTMPK-VVKSAGREIILKAKDFVKQN 139
           VF  P+ V++S   E+I+K KDF++ +
Sbjct: 325 VFAFPREVMQSTSLEVIVKDKDFIRDD 351


>02_05_0587 +
           30162806-30163183,30163315-30163478,30163571-30163654,
           30163737-30163794,30164092-30164145,30164244-30164309,
           30164310-30164381,30164547-30164627,30165361-30165533,
           30165916-30166018,30166148-30166279,30166432-30166554,
           30166898-30167002,30167397-30167722,30167919-30168258,
           30169973-30170113,30170589-30170801,30170901-30171119,
           30171272-30171619,30171711-30172043,30172548-30172601
          Length = 1188

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +1

Query: 37  NGKNHITGIPTKYLSWPLLSYEHCLLISKPPDSS 138
           NG +     P +   WP+    +  L+  PP+ S
Sbjct: 373 NGLSEFESFPLRVTGWPVELMAYAFLVVSPPEMS 406


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,866,604
Number of Sequences: 37544
Number of extensions: 108549
Number of successful extensions: 202
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)