Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18e06
         (297 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132862-14|CAB60548.1|  541|Caenorhabditis elegans Hypothetical...    28   1.0  
U29377-2|AAA68713.4|  627|Caenorhabditis elegans Hypothetical pr...    28   1.4  
U29377-1|AAZ94294.1|  773|Caenorhabditis elegans Hypothetical pr...    28   1.4  
Z35601-4|CAO82063.1|  145|Caenorhabditis elegans Hypothetical pr...    26   5.6  
Z35601-3|CAO82062.1|  185|Caenorhabditis elegans Hypothetical pr...    26   5.6  
Z35600-6|CAO82037.1|  145|Caenorhabditis elegans Hypothetical pr...    26   5.6  
Z35600-5|CAO82036.1|  185|Caenorhabditis elegans Hypothetical pr...    26   5.6  
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ...    25   7.4  
Z81536-4|CAB04364.1|  310|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>AL132862-14|CAB60548.1|  541|Caenorhabditis elegans Hypothetical
           protein Y73F8A.20 protein.
          Length = 541

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 131 ILLFCFTKSFAFNIISRPALFTTLGIVNTNLN 226
           ++ F  T +F    +SRPALFTT G  +  LN
Sbjct: 169 VIKFLNTLTFHPVSVSRPALFTTNGYASAGLN 200


>U29377-2|AAA68713.4|  627|Caenorhabditis elegans Hypothetical
           protein K05F1.6b protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -1

Query: 294 YQVLLSSTAVVFVTIAFFIHFSLF--KLVFTMPKVVKSAGREIILKAKDFVKQNRRI 130
           Y  LLS+ ++  V +  F  FSLF   LVF +P+  +    E +  A +F++  +++
Sbjct: 483 YIALLSNISLPIVPMIIFAVFSLFAGMLVFVLPETSEKPLPETLDDAINFLEPTKQV 539


>U29377-1|AAZ94294.1|  773|Caenorhabditis elegans Hypothetical
           protein K05F1.6a protein.
          Length = 773

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -1

Query: 294 YQVLLSSTAVVFVTIAFFIHFSLF--KLVFTMPKVVKSAGREIILKAKDFVKQNRRI 130
           Y  LLS+ ++  V +  F  FSLF   LVF +P+  +    E +  A +F++  +++
Sbjct: 629 YIALLSNISLPIVPMIIFAVFSLFAGMLVFVLPETSEKPLPETLDDAINFLEPTKQV 685


>Z35601-4|CAO82063.1|  145|Caenorhabditis elegans Hypothetical
           protein R10E9.3b protein.
          Length = 145

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 294 YQVLLSSTAVVFVTIAFFIHFSLFKLVFTMPKVVKSAGRE 175
           Y  +  +  VV + +AF +  SL KLVF +  + K  G +
Sbjct: 90  YHGIKPALYVVLLMLAFEMTLSLVKLVFAIVLMAKDGGND 129


>Z35601-3|CAO82062.1|  185|Caenorhabditis elegans Hypothetical
           protein R10E9.3a protein.
          Length = 185

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 294 YQVLLSSTAVVFVTIAFFIHFSLFKLVFTMPKVVKSAGRE 175
           Y  +  +  VV + +AF +  SL KLVF +  + K  G +
Sbjct: 90  YHGIKPALYVVLLMLAFEMTLSLVKLVFAIVLMAKDGGND 129


>Z35600-6|CAO82037.1|  145|Caenorhabditis elegans Hypothetical
           protein R10E9.3b protein.
          Length = 145

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 294 YQVLLSSTAVVFVTIAFFIHFSLFKLVFTMPKVVKSAGRE 175
           Y  +  +  VV + +AF +  SL KLVF +  + K  G +
Sbjct: 90  YHGIKPALYVVLLMLAFEMTLSLVKLVFAIVLMAKDGGND 129


>Z35600-5|CAO82036.1|  185|Caenorhabditis elegans Hypothetical
           protein R10E9.3a protein.
          Length = 185

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 294 YQVLLSSTAVVFVTIAFFIHFSLFKLVFTMPKVVKSAGRE 175
           Y  +  +  VV + +AF +  SL KLVF +  + K  G +
Sbjct: 90  YHGIKPALYVVLLMLAFEMTLSLVKLVFAIVLMAKDGGND 129


>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
           protein Y113G7B.12 protein.
          Length = 1042

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +1

Query: 94  SYEHCLLISKPPDSSVLLH--KILRLQYYF 177
           S+ HC++I  PP    L+   K   L YYF
Sbjct: 813 SWNHCIVIPDPPKIRELIRDPKNYALNYYF 842


>Z81536-4|CAB04364.1|  310|Caenorhabditis elegans Hypothetical
           protein F40D4.5 protein.
          Length = 310

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 291 QVLLSSTAVVFVTIAFFIHFSLFKLVFTMPKV-VKSAGREIILKAKDFV 148
           Q+ ++S  VVF  +  F HF+   L +  P +  KS+  + +L     +
Sbjct: 9   QICIASEIVVFNILGLFGHFNFLCLTYKKPALRSKSSYLQCVLSVSHII 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,101,871
Number of Sequences: 27780
Number of extensions: 104150
Number of successful extensions: 245
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)