Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18e06
         (297 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   3.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   3.2  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            21   4.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    20   5.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   5.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   5.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   5.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   7.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   7.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   9.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 3.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 130 QGVLISINNVRKRVVAMTGT*LGYQ 56
           Q V  S+N++ K VVA  GT + +Q
Sbjct: 292 QIVKFSLNSILKTVVAYGGTSVMHQ 316


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 3.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 141 SASQNPSPSILFLDQH 188
           S+S++PSPS+L    H
Sbjct: 39  SSSRSPSPSLLTSQPH 54


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 132 FFCSASQNPSPSILFL 179
           FFC A+  P P I +L
Sbjct: 42  FFCMATGFPRPEITWL 57


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = -3

Query: 187 CWSRNNIEGEGFCEAEQKNQGVLISINNVR 98
           CW+ N +      E   KN+  L +I  ++
Sbjct: 327 CWNENRLLDRRNIEVVAKNKETLQAITGLK 356


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 138 CSASQNPSPSI 170
           CSA+ NP+P +
Sbjct: 443 CSAAGNPTPQV 453


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 138 CSASQNPSPSI 170
           CSA+ NP+P +
Sbjct: 443 CSAAGNPTPQV 453


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 74   YLVGIPVM*FLPFXLW 27
            ++ G+P + F PF  W
Sbjct: 1149 FMEGMPHLPFTPFNFW 1164


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.8 bits (39), Expect = 7.4
 Identities = 5/10 (50%), Positives = 10/10 (100%)
 Frame = +3

Query: 132 FFCSASQNPS 161
           F+C+A++NP+
Sbjct: 313 FYCAATKNPN 322


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 7.4
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = +1

Query: 43  KNHITGIPTKYLSW 84
           K  I G+PT  + W
Sbjct: 252 KKEIKGVPTYLIKW 265


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 138 CSASQNPSPSILFL 179
           C A  NP P I+++
Sbjct: 25  CQARGNPQPDIIWV 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,210
Number of Sequences: 438
Number of extensions: 1296
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6119169
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)