Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18e01
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0259 - 1996427-1998772 31 1.0
08_02_0272 + 15189617-15190276,15190361-15191107 30 2.3
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 29 3.1
09_06_0010 - 20193577-20193921,20194014-20194160,20194239-201944... 29 4.1
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830... 29 4.1
05_03_0469 + 14439472-14440905 28 7.1
03_02_0950 + 12661008-12662312,12662403-12662576 28 7.1
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924... 28 7.1
11_06_0198 - 21158350-21159528 28 9.4
08_01_0692 + 6121443-6122266,6122812-6124798 28 9.4
>03_01_0259 - 1996427-1998772
Length = 781
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -3
Query: 493 IFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSK 389
I ++ V++ N HHALKLI + + +I GDSK
Sbjct: 732 ILVKKNVRICN-HCHHALKLISRYSGRRIVVGDSK 765
>08_02_0272 + 15189617-15190276,15190361-15191107
Length = 468
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 173 HDVAFVHGGLKVPVVFEGVSGAITVDDTVITRTFRVIELQVLFVFGGHDLEVY 331
HD++F HG L++P + VDDT + F ++ + L G +++ Y
Sbjct: 300 HDISFRHGALRIP--------RLAVDDTTEHKLFSLMAFEQLHGAGANEVTAY 344
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 425 LVDQLEGVMVPFVYELDSLLGEDHSKLDG 511
+V GVM P + +L LLGE+++KL G
Sbjct: 7 IVGATTGVMKPLLSKLTKLLGEEYAKLKG 35
>09_06_0010 -
20193577-20193921,20194014-20194160,20194239-20194495,
20194619-20194826
Length = 318
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 354 PPCWKTTEYTSRS-CPPKTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSP 196
PP TT T+ + PP T S S + T SSTV + + TT T SP
Sbjct: 256 PPAAPTTTKTAAAPAPPPTASWESFDLLSSMPSTSSSTVTTTMAAATTTTTTSP 309
>04_03_0694 +
18781776-18781994,18782475-18782648,18782743-18783057,
18783791-18785569,18786334-18786651,18787052-18787105
Length = 952
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = -3
Query: 706 QLYMSVVI---GEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDG 536
+LY+ +++ G Y+ A+ S + G +KE K L+E+ T++ +L T G
Sbjct: 491 ELYLKILLEDLGRYDEALQYISSLEANQAGLTVKEYGKILVEHRPAETVEILLRLCTDGG 550
Query: 535 KEIVK 521
+ +
Sbjct: 551 DPMTR 555
>05_03_0469 + 14439472-14440905
Length = 477
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -1
Query: 399 VTPKTKPARKSPGS--LPPCWKTTEYTSRSCPP 307
+T T+ AR PG+ +PP W+ T+RS PP
Sbjct: 187 LTAVTEFARGVPGAPTVPPVWEREALTTRSWPP 219
>03_02_0950 + 12661008-12662312,12662403-12662576
Length = 492
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 721 DVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEV 620
+VL+ + +GEY+ AIA CS+ L++ K V
Sbjct: 411 EVLSSRASSYKEVGEYKKAIADCSKVLEKDKDNV 444
>01_05_0346 +
21191542-21191783,21191988-21192072,21192159-21192422,
21192518-21192820,21193695-21193799,21193916-21194020,
21194613-21194712,21195614-21195933,21196183-21196359,
21196432-21196560,21196592-21196636,21196851-21197078
Length = 700
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -3
Query: 409 IAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKLDNT 275
I F D K+K K K +EN+ + F +M+ D QYL +NT
Sbjct: 354 ILFNDMKEKGVKSGK-KCVLSMENHGIGFLLMAYNDVQYLVPNNT 397
>11_06_0198 - 21158350-21159528
Length = 392
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 695 ECRHW*IRDRYRQML*ISEGKEGRGYQGSREASDRKRQEEHH 570
+CR W R + + + E +E Y G RE RKR + HH
Sbjct: 275 DCRQW--RRQEEEEAAVDE-EEDHNYGGEREQHCRKRCQHHH 313
>08_01_0692 + 6121443-6122266,6122812-6124798
Length = 936
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 422 LLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 535
++V GVM P + +L +L+G+++ KL G + FL
Sbjct: 7 IVVSASMGVMKPLLAKLTTLMGDEYKKLKGVRKQVSFL 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,395,258
Number of Sequences: 37544
Number of extensions: 454510
Number of successful extensions: 1537
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1537
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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