Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18d24
         (822 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527...   193   1e-49
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226...   192   4e-49
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261...   180   2e-45
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624...   142   3e-34
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494...    56   4e-08
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173...    38   0.007
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114...    29   5.9  
11_06_0756 + 26952196-26952264,26952760-26953206,26954009-269553...    28   7.8  
11_04_0441 + 17781533-17781775,17782007-17782114,17782386-177824...    28   7.8  
02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810           28   7.8  

>03_02_1006 +
           13150394-13150450,13150787-13150899,13152538-13152709,
           13153791-13153878,13153971-13154072,13154197-13154292,
           13154547-13154578,13154727-13154802,13155264-13155317,
           13155431-13155453
          Length = 270

 Score =  193 bits (471), Expect = 1e-49
 Identities = 87/139 (62%), Positives = 101/139 (72%)
 Frame = -3

Query: 715 VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGG 536
           V GT+ F Q+ +  P  V+G V GL  G HGFH+H  GD TNGC S G H+NP  ++HG 
Sbjct: 132 VKGTIHFVQEGD-GPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGA 190

Query: 535 PSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHE 356
           P    RH GDLGN+ A ED GV  + + DSQI L GPNSIIGR +VVHADPDDLG GGHE
Sbjct: 191 PEDETRHAGDLGNVTAGED-GVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHE 249

Query: 355 LSKTTGNAGGRIACGVIGL 299
           LSKTTGNAGGR+ACG+IGL
Sbjct: 250 LSKTTGNAGGRVACGIIGL 268


>07_03_1599 -
           28022196-28022218,28022355-28022408,28022545-28022620,
           28022727-28022758,28022921-28023016,28023105-28023206,
           28023291-28023366
          Length = 152

 Score =  192 bits (467), Expect = 4e-49
 Identities = 89/139 (64%), Positives = 101/139 (72%)
 Frame = -3

Query: 715 VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGG 536
           V GT+FF Q+ +  P  V+G V GL  G HGFHVH  GD TNGC S G HFNP  ++HG 
Sbjct: 14  VKGTIFFSQEGD-GPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGA 72

Query: 535 PSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHE 356
           P    RH GDLGNI A  D GV  V++ DSQI L G +SIIGR +VVHADPDDLG GGHE
Sbjct: 73  PQDENRHAGDLGNITAGAD-GVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHE 131

Query: 355 LSKTTGNAGGRIACGVIGL 299
           LSKTTGNAGGR+ACG+IGL
Sbjct: 132 LSKTTGNAGGRVACGIIGL 150


>08_02_1596 +
           28125331-28125556,28125986-28126047,28126160-28126199,
           28126934-28127029,28127138-28127169,28127274-28127349,
           28127430-28127483,28127916-28127941
          Length = 203

 Score =  180 bits (437), Expect = 2e-45
 Identities = 87/159 (54%), Positives = 102/159 (64%), Gaps = 2/159 (1%)
 Frame = -3

Query: 760 ISQCPPKQFXVLRG--DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNG 587
           ++    K   VL+G   V G V   Q D++ P  V+  V GLT G HGFH+HEFGD TNG
Sbjct: 47  VADATKKAVAVLKGTSQVEGVVTLTQ-DDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNG 105

Query: 586 CTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGR 407
           C S G HFNP    HG P   VRH GDLGNI A    GV + +I D QI L GPNS++GR
Sbjct: 106 CISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVA-NAEGVAEATIVDKQIPLSGPNSVVGR 164

Query: 406 TLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGLAKI 290
             VVH   DDLG GGHELS +TGNAGGR+ACGV+GL  +
Sbjct: 165 AFVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLTPL 203


>03_02_0185 -
           6239421-6239480,6239971-6240024,6240523-6240578,
           6241108-6241183,6241276-6241307,6241421-6241516,
           6242498-6242599,6242728-6242833
          Length = 193

 Score =  142 bits (344), Expect = 3e-34
 Identities = 67/117 (57%), Positives = 77/117 (65%)
 Frame = -3

Query: 715 VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGG 536
           V+G + F Q        V G V GL  G HGFH+H FGD TNGC S G HFNP  + HG 
Sbjct: 23  VAGALHFFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGA 82

Query: 535 PSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLG 365
           PS   RHVGDLGNI A +D GV  + I+D QISL GP+SI+GR +VVHAD DDLG G
Sbjct: 83  PSDDERHVGDLGNIVANKD-GVADIFIKDLQISLSGPHSILGRAVVVHADSDDLGRG 138


>04_04_0863 +
           28847761-28848009,28848108-28848131,28849388-28849460,
           28849550-28849684,28850191-28850411,28851747-28851983
          Length = 312

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
 Frame = -3

Query: 667 VVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEA 488
           +V     GL+ GKHG+ ++EFGD T G  S G  +NP       P      +GDLG +EA
Sbjct: 191 IVEATFSGLSPGKHGWSINEFGDLTRGAESTGKVYNPSDYRSNKP------LGDLGTLEA 244

Query: 487 IEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHA--DPDDLGLGGHELSKTTG 338
            E  G  + S    ++ +     +IGR++ ++A  D  D G+    ++++ G
Sbjct: 245 GE-KGEAQFSASKEKLKV---VDLIGRSIALYATEDRSDPGIAAAVIARSAG 292


>03_06_0167 -
           32115770-32115886,32116388-32117102,32117178-32117383,
           32118094-32118138,32119047-32119109,32119726-32119749,
           32120673-32120772,32120814-32120907,32121036-32121074,
           32121605-32121668
          Length = 488

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 17/35 (48%), Positives = 18/35 (51%)
 Frame = -3

Query: 676 SPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAG 572
           S + V   V GL    HGFHVH  G  TNGC   G
Sbjct: 35  SLITVKENVSGLKPVLHGFHVHALGGTTNGCMRNG 69


>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
            33334405-33334484
          Length = 1811

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 430  GPNSIIGRTLVVHADPDDLGLGG 362
            GP + +GR L+  +DP+D+G  G
Sbjct: 1048 GPEATVGRPLLSSSDPEDIGTEG 1070


>11_06_0756 +
           26952196-26952264,26952760-26953206,26954009-26955358,
           26955400-26955408
          Length = 624

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
 Frame = -3

Query: 574 GAHFNPEKQDH--GGPSSAVRHVGD--LGNIE---AIEDSGVTKVSIQDSQISLHGPNSI 416
           GA  +PE   H   G       V D  L NI    A+   G+  V+  D+++SL      
Sbjct: 222 GASHDPEALLHIAQGSRGTYSFVDDDNLANIAGALAVCLGGLKTVAAVDTRVSLKAAELS 281

Query: 415 IGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVI 305
            G   +V  D      GG+E S   G A G +  GV+
Sbjct: 282 GGGARIVRVDS-----GGYESSVACGGASGEVVVGVL 313


>11_04_0441 +
           17781533-17781775,17782007-17782114,17782386-17782471,
           17782546-17782807,17782921-17783120,17783770-17784012,
           17784118-17784394,17784625-17784759,17784880-17784960,
           17785311-17785406,17785661-17785756,17785834-17785890,
           17785967-17786035,17786154-17786240,17786534-17786635,
           17786730-17786819,17786900-17786980,17787573-17787653,
           17787761-17787856,17787937-17787993,17788093-17788137,
           17788218-17788346
          Length = 906

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
 Frame = -1

Query: 741 SSXAYFVVMLAELFSSISRMKSHLLLFLERSRA*LRVNTVSMCTNLVTTQTVAHQLELIS 562
           SS   +++   +L  SI R+ ++++ + + S A  R+  VS C  L+      H  +LIS
Sbjct: 377 SSLVGYLLYHDDLRPSILRLINNIIGYWKDSEA--RIKVVSFCHMLIQLAISTHNDKLIS 434

Query: 561 TLKNKI--MVVPVLLY 520
            +++ +  MVV  L++
Sbjct: 435 FVQDNLIPMVVRCLIF 450


>02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810
          Length = 472

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -3

Query: 601 DNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPN 422
           D     TS GAH +P +  H  PSS +    +  +      S  T VS++ ++     PN
Sbjct: 15  DIVKAATSPGAHSSPLRPAHSSPSSTLSEASNTSS------SSATSVSLKRARAPRKRPN 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,327,346
Number of Sequences: 37544
Number of extensions: 450048
Number of successful extensions: 1175
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)