Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18d24
         (822 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   2.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   4.5  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    23   4.5  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    23   4.5  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    23   4.5  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   4.5  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    23   4.5  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    23   4.5  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    23   4.5  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 56  HNFRNAIKNNFITSYRLTYYYN 121
           +N  N   NN+ T+Y+   YYN
Sbjct: 95  NNNYNNYNNNYNTNYKKLQYYN 116


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 286 IHTFFICWAWYY 251
           I  FFICW  YY
Sbjct: 266 IAVFFICWTPYY 277


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 280 TFFICWAWYY 251
           TFFICWA ++
Sbjct: 268 TFFICWAPFH 277


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 68  NAIKNNFITSYRLTYYYN 121
           N   NN+ T+Y+   YYN
Sbjct: 95  NNYNNNYNTNYKKLQYYN 112


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 68  NAIKNNFITSYRLTYYYN 121
           N   NN+ T+Y+   YYN
Sbjct: 95  NNYNNNYNTNYKKLQYYN 112


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 68  NAIKNNFITSYRLTYYYN 121
           N   NN+ T+Y+   YYN
Sbjct: 95  NNYNNNYNTNYKKLQYYN 112


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 68  NAIKNNFITSYRLTYYYN 121
           N   NN+ T+Y+   YYN
Sbjct: 95  NNYNNNYNTNYKKLQYYN 112


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 68  NAIKNNFITSYRLTYYYN 121
           N   NN+ T+Y+   YYN
Sbjct: 95  NNYNNNYNTNYKKLQYYN 112


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 68  NAIKNNFITSYRLTYYYN 121
           N   NN+ T+Y+   YYN
Sbjct: 95  NNYNNNYNTNYKKLQYYN 112


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 68  NAIKNNFITSYRLTYYYN 121
           N   NN+ T+Y+   YYN
Sbjct: 95  NNYNNNYNTNYKKLQYYN 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,424
Number of Sequences: 438
Number of extensions: 5156
Number of successful extensions: 21
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)