Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18d23
(803 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X81788-1|CAA57387.1| 206|Homo sapiens ICT1 protein protein. 122 2e-27
BT007111-1|AAP35775.1| 206|Homo sapiens immature colon carcinom... 122 2e-27
BC015335-1|AAH15335.1| 206|Homo sapiens immature colon carcinom... 122 2e-27
AK222553-1|BAD96273.1| 206|Homo sapiens immature colon carcinom... 121 4e-27
BC129945-1|AAI29946.1| 991|Homo sapiens SFI1 protein protein. 31 3.7
BC110814-1|AAI10815.1| 1137|Homo sapiens SFI1 protein protein. 31 3.7
BC046221-1|AAH46221.2| 209|Homo sapiens SFI1 protein protein. 31 3.7
BC033613-1|AAH33613.2| 294|Homo sapiens SFI1 protein protein. 31 3.7
BC021576-1|AAH21576.1| 607|Homo sapiens SFI1 protein protein. 31 3.7
BC016445-1|AAH16445.1| 617|Homo sapiens vacuolar protein sortin... 31 3.7
AL109802-2|CAH70755.1| 1211|Homo sapiens Sfi1 homolog, spindle a... 31 3.7
AL109802-1|CAM13202.1| 1160|Homo sapiens Sfi1 homolog, spindle a... 31 3.7
AL096768-9|CAI23034.1| 1211|Homo sapiens Sfi1 homolog, spindle a... 31 3.7
AL096768-8|CAM28334.1| 1160|Homo sapiens Sfi1 homolog, spindle a... 31 3.7
AL096701-9|CAI12881.1| 1211|Homo sapiens Sfi1 homolog, spindle a... 31 3.7
AL096701-8|CAM14700.1| 1160|Homo sapiens Sfi1 homolog, spindle a... 31 3.7
AK027754-1|BAB55345.1| 617|Homo sapiens protein ( Homo sapiens ... 31 3.7
AF308803-1|AAG34680.1| 617|Homo sapiens vacuolar protein sortin... 31 3.7
AF201694-1|AAF91174.1| 617|Homo sapiens vacuolar protein sortin... 31 3.7
AB011114-1|BAA25468.2| 1212|Homo sapiens KIAA0542 protein protein. 31 3.7
Y00318-3|CAA68418.1| 244|Homo sapiens protein ( Human mRNA for ... 31 6.4
Y00318-1|CAA68416.1| 565|Homo sapiens protein ( Human mRNA for ... 31 6.4
J02770-1|AAA52455.1| 583|Homo sapiens IF protein. 31 6.4
>X81788-1|CAA57387.1| 206|Homo sapiens ICT1 protein protein.
Length = 206
Score = 122 bits (294), Expect = 2e-27
Identities = 65/152 (42%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Frame = -1
Query: 614 YKSSISLETLYPNSSLKLTTPAFKPDGNEKFSGFIPIQKLDISYSASSGPGGQNVNKVHT 435
+KS SL+ LYP S T P+G ++ IP+ +L ISY SSGPGGQNVNKV++
Sbjct: 39 FKSIYSLDKLYPESQGSDTAWRV-PNGAKQADSDIPLDRLTISYCRSSGPGGQNVNKVNS 97
Query: 434 KVDLRFKLSDADWIHPDIRQRMLELYDKKLTKEGYLIIKSDCTRSQQLNLADCMRKLRNM 255
K ++RF L+ A+WI +RQ++ + K+ + G LI+ S+ +R Q NLADC++K+R+M
Sbjct: 98 KAEVRFHLATAEWIAEPVRQKIAITHKNKINRLGELILTSESSRYQFRNLADCLQKIRDM 157
Query: 254 IRDAEVTKREPSPETQE--RIRQRQLKAARLR 165
I +A T +EP+ E + RIR + RLR
Sbjct: 158 ITEASQTPKEPTKEDVKLHRIRIENMNRERLR 189
>BT007111-1|AAP35775.1| 206|Homo sapiens immature colon carcinoma
transcript 1 protein.
Length = 206
Score = 122 bits (294), Expect = 2e-27
Identities = 65/152 (42%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Frame = -1
Query: 614 YKSSISLETLYPNSSLKLTTPAFKPDGNEKFSGFIPIQKLDISYSASSGPGGQNVNKVHT 435
+KS SL+ LYP S T P+G ++ IP+ +L ISY SSGPGGQNVNKV++
Sbjct: 39 FKSIYSLDKLYPESQGSDTAWRV-PNGAKQADSDIPLDRLTISYCRSSGPGGQNVNKVNS 97
Query: 434 KVDLRFKLSDADWIHPDIRQRMLELYDKKLTKEGYLIIKSDCTRSQQLNLADCMRKLRNM 255
K ++RF L+ A+WI +RQ++ + K+ + G LI+ S+ +R Q NLADC++K+R+M
Sbjct: 98 KAEVRFHLATAEWIAEPVRQKIAITHKNKINRLGELILTSESSRYQFRNLADCLQKIRDM 157
Query: 254 IRDAEVTKREPSPETQE--RIRQRQLKAARLR 165
I +A T +EP+ E + RIR + RLR
Sbjct: 158 ITEASQTPKEPTKEDVKLHRIRIENMNRERLR 189
>BC015335-1|AAH15335.1| 206|Homo sapiens immature colon carcinoma
transcript 1 protein.
Length = 206
Score = 122 bits (294), Expect = 2e-27
Identities = 65/152 (42%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Frame = -1
Query: 614 YKSSISLETLYPNSSLKLTTPAFKPDGNEKFSGFIPIQKLDISYSASSGPGGQNVNKVHT 435
+KS SL+ LYP S T P+G ++ IP+ +L ISY SSGPGGQNVNKV++
Sbjct: 39 FKSIYSLDKLYPESQGSDTAWRV-PNGAKQADSDIPLDRLTISYCRSSGPGGQNVNKVNS 97
Query: 434 KVDLRFKLSDADWIHPDIRQRMLELYDKKLTKEGYLIIKSDCTRSQQLNLADCMRKLRNM 255
K ++RF L+ A+WI +RQ++ + K+ + G LI+ S+ +R Q NLADC++K+R+M
Sbjct: 98 KAEVRFHLATAEWIAEPVRQKIAITHKNKINRLGELILTSESSRYQFRNLADCLQKIRDM 157
Query: 254 IRDAEVTKREPSPETQE--RIRQRQLKAARLR 165
I +A T +EP+ E + RIR + RLR
Sbjct: 158 ITEASQTPKEPTKEDVKLHRIRIENMNRERLR 189
>AK222553-1|BAD96273.1| 206|Homo sapiens immature colon carcinoma
transcript 1 variant protein.
Length = 206
Score = 121 bits (291), Expect = 4e-27
Identities = 64/152 (42%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Frame = -1
Query: 614 YKSSISLETLYPNSSLKLTTPAFKPDGNEKFSGFIPIQKLDISYSASSGPGGQNVNKVHT 435
+KS SL+ LYP S T P+G ++ IP+ +L ISY SSGPGGQNVN+V++
Sbjct: 39 FKSIYSLDKLYPESQGSDTAWRV-PNGAKQADSDIPLDRLTISYCRSSGPGGQNVNRVNS 97
Query: 434 KVDLRFKLSDADWIHPDIRQRMLELYDKKLTKEGYLIIKSDCTRSQQLNLADCMRKLRNM 255
K ++RF L+ A+WI +RQ++ + K+ + G LI+ S+ +R Q NLADC++K+R+M
Sbjct: 98 KAEVRFHLATAEWIAEPVRQKIAITHKNKINRLGELILTSESSRYQFRNLADCLQKIRDM 157
Query: 254 IRDAEVTKREPSPETQE--RIRQRQLKAARLR 165
I +A T +EP+ E + RIR + RLR
Sbjct: 158 ITEASQTPKEPTKEDVKLHRIRIENMNRERLR 189
>BC129945-1|AAI29946.1| 991|Homo sapiens SFI1 protein protein.
Length = 991
Score = 31.5 bits (68), Expect = 3.7
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = -1
Query: 290 NLADCMRKLRNMIRDAEVTKREPSPETQERIRQRQLKAARLRVAIKREDSLKRSLKQP 117
NL C R+ ++ R E+ + EP PE QE +Q Q + ++ + I+ ++ +QP
Sbjct: 918 NLWSCRRQASSLRRWLELNREEPGPEDQEVEQQVQKELEQVEMQIQLLAEELQAQRQP 975
>BC110814-1|AAI10815.1| 1137|Homo sapiens SFI1 protein protein.
Length = 1137
Score = 31.5 bits (68), Expect = 3.7
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = -1
Query: 290 NLADCMRKLRNMIRDAEVTKREPSPETQERIRQRQLKAARLRVAIKREDSLKRSLKQP 117
NL C R+ ++ R E+ + EP PE QE +Q Q + ++ + I+ ++ +QP
Sbjct: 1064 NLWSCRRQASSLRRWLELNREEPGPEDQEVEQQVQKELEQVEMQIQLLAEELQAQRQP 1121
>BC046221-1|AAH46221.2| 209|Homo sapiens SFI1 protein protein.
Length = 209
Score = 31.5 bits (68), Expect = 3.7
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = -1
Query: 290 NLADCMRKLRNMIRDAEVTKREPSPETQERIRQRQLKAARLRVAIKREDSLKRSLKQP 117
NL C R+ ++ R E+ + EP PE QE +Q Q + ++ + I+ ++ +QP
Sbjct: 136 NLWSCRRQASSLRRWLELNREEPGPEDQEVEQQVQKELEQVEMQIQLLAEELQAQRQP 193
>BC033613-1|AAH33613.2| 294|Homo sapiens SFI1 protein protein.
Length = 294
Score = 31.5 bits (68), Expect = 3.7
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = -1
Query: 290 NLADCMRKLRNMIRDAEVTKREPSPETQERIRQRQLKAARLRVAIKREDSLKRSLKQP 117
NL C R+ ++ R E+ + EP PE QE +Q Q + ++ + I+ ++ +QP
Sbjct: 221 NLWSCRRQASSLRRWLELNREEPGPEDQEVEQQVQKELEQVEMQIQLLAEELQAQRQP 278
>BC021576-1|AAH21576.1| 607|Homo sapiens SFI1 protein protein.
Length = 607
Score = 31.5 bits (68), Expect = 3.7
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = -1
Query: 290 NLADCMRKLRNMIRDAEVTKREPSPETQERIRQRQLKAARLRVAIKREDSLKRSLKQP 117
NL C R+ ++ R E+ + EP PE QE +Q Q + ++ + I+ ++ +QP
Sbjct: 534 NLWSCRRQASSLRRWLELNREEPGPEDQEVEQQVQKELEQVEMQIQLLAEELQAQRQP 591
>BC016445-1|AAH16445.1| 617|Homo sapiens vacuolar protein sorting
33 homolog B (yeast) protein.
Length = 617
Score = 31.5 bits (68), Expect = 3.7
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 631 SNAVQVAFLIKPRIKFKRNVAKVILGETLSNMTHKNK 741
S+ Q+ FL++PRIK R +A ++ + L+ T K K
Sbjct: 76 SSNEQLCFLVRPRIKNMRYIASLVNADKLAGRTRKYK 112
>AL109802-2|CAH70755.1| 1211|Homo sapiens Sfi1 homolog, spindle
assembly associated (yeast) protein.
Length = 1211
Score = 31.5 bits (68), Expect = 3.7
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = -1
Query: 290 NLADCMRKLRNMIRDAEVTKREPSPETQERIRQRQLKAARLRVAIKREDSLKRSLKQP 117
NL C R+ ++ R E+ + EP PE QE +Q Q + ++ + I+ ++ +QP
Sbjct: 1138 NLWSCRRQASSLRRWLELNREEPGPEDQEVEQQVQKELEQVEMQIQLLAEELQAQRQP 1195
>AL109802-1|CAM13202.1| 1160|Homo sapiens Sfi1 homolog, spindle
assembly associated (yeast) protein.
Length = 1160
Score = 31.5 bits (68), Expect = 3.7
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = -1
Query: 290 NLADCMRKLRNMIRDAEVTKREPSPETQERIRQRQLKAARLRVAIKREDSLKRSLKQP 117
NL C R+ ++ R E+ + EP PE QE +Q Q + ++ + I+ ++ +QP
Sbjct: 1087 NLWSCRRQASSLRRWLELNREEPGPEDQEVEQQVQKELEQVEMQIQLLAEELQAQRQP 1144
>AL096768-9|CAI23034.1| 1211|Homo sapiens Sfi1 homolog, spindle
assembly associated (yeast) protein.
Length = 1211
Score = 31.5 bits (68), Expect = 3.7
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = -1
Query: 290 NLADCMRKLRNMIRDAEVTKREPSPETQERIRQRQLKAARLRVAIKREDSLKRSLKQP 117
NL C R+ ++ R E+ + EP PE QE +Q Q + ++ + I+ ++ +QP
Sbjct: 1138 NLWSCRRQASSLRRWLELNREEPGPEDQEVEQQVQKELEQVEMQIQLLAEELQAQRQP 1195
>AL096768-8|CAM28334.1| 1160|Homo sapiens Sfi1 homolog, spindle
assembly associated (yeast) protein.
Length = 1160
Score = 31.5 bits (68), Expect = 3.7
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = -1
Query: 290 NLADCMRKLRNMIRDAEVTKREPSPETQERIRQRQLKAARLRVAIKREDSLKRSLKQP 117
NL C R+ ++ R E+ + EP PE QE +Q Q + ++ + I+ ++ +QP
Sbjct: 1087 NLWSCRRQASSLRRWLELNREEPGPEDQEVEQQVQKELEQVEMQIQLLAEELQAQRQP 1144
>AL096701-9|CAI12881.1| 1211|Homo sapiens Sfi1 homolog, spindle
assembly associated (yeast) protein.
Length = 1211
Score = 31.5 bits (68), Expect = 3.7
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = -1
Query: 290 NLADCMRKLRNMIRDAEVTKREPSPETQERIRQRQLKAARLRVAIKREDSLKRSLKQP 117
NL C R+ ++ R E+ + EP PE QE +Q Q + ++ + I+ ++ +QP
Sbjct: 1138 NLWSCRRQASSLRRWLELNREEPGPEDQEVEQQVQKELEQVEMQIQLLAEELQAQRQP 1195
>AL096701-8|CAM14700.1| 1160|Homo sapiens Sfi1 homolog, spindle
assembly associated (yeast) protein.
Length = 1160
Score = 31.5 bits (68), Expect = 3.7
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = -1
Query: 290 NLADCMRKLRNMIRDAEVTKREPSPETQERIRQRQLKAARLRVAIKREDSLKRSLKQP 117
NL C R+ ++ R E+ + EP PE QE +Q Q + ++ + I+ ++ +QP
Sbjct: 1087 NLWSCRRQASSLRRWLELNREEPGPEDQEVEQQVQKELEQVEMQIQLLAEELQAQRQP 1144
>AK027754-1|BAB55345.1| 617|Homo sapiens protein ( Homo sapiens
cDNA FLJ14848 fis, clone PLACE1000492, highly similar to
Rat vacuolar protein sorting homolog r-vps33b mRNA. ).
Length = 617
Score = 31.5 bits (68), Expect = 3.7
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 631 SNAVQVAFLIKPRIKFKRNVAKVILGETLSNMTHKNK 741
S+ Q+ FL++PRIK R +A ++ + L+ T K K
Sbjct: 76 SSNEQLCFLVRPRIKNMRYIASLVNADKLAGRTRKYK 112
>AF308803-1|AAG34680.1| 617|Homo sapiens vacuolar protein sorting
protein 33B protein.
Length = 617
Score = 31.5 bits (68), Expect = 3.7
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 631 SNAVQVAFLIKPRIKFKRNVAKVILGETLSNMTHKNK 741
S+ Q+ FL++PRIK R +A ++ + L+ T K K
Sbjct: 76 SSNEQLCFLVRPRIKNMRYIASLVNADKLAGRTRKYK 112
>AF201694-1|AAF91174.1| 617|Homo sapiens vacuolar protein sorting
33B protein.
Length = 617
Score = 31.5 bits (68), Expect = 3.7
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 631 SNAVQVAFLIKPRIKFKRNVAKVILGETLSNMTHKNK 741
S+ Q+ FL++PRIK R +A ++ + L+ T K K
Sbjct: 76 SSNEQLCFLVRPRIKNMRYIASLVNADKLAGRTRKYK 112
>AB011114-1|BAA25468.2| 1212|Homo sapiens KIAA0542 protein protein.
Length = 1212
Score = 31.5 bits (68), Expect = 3.7
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = -1
Query: 290 NLADCMRKLRNMIRDAEVTKREPSPETQERIRQRQLKAARLRVAIKREDSLKRSLKQP 117
NL C R+ ++ R E+ + EP PE QE +Q Q + ++ + I+ ++ +QP
Sbjct: 1139 NLWSCRRQASSLRRWLELNREEPGPEDQEVEQQVQKELEQVEMQIQLLAEELQAQRQP 1196
>Y00318-3|CAA68418.1| 244|Homo sapiens protein ( Human mRNA for
complement control protein factor I. ).
Length = 244
Score = 30.7 bits (66), Expect = 6.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 401 DWIHPDIRQRMLELYDKKLTKEGY 330
DWIHPD+++ ++E D+ + E Y
Sbjct: 59 DWIHPDLKRIVIEYVDRIIFHENY 82
>Y00318-1|CAA68416.1| 565|Homo sapiens protein ( Human mRNA for
complement control protein factor I. ).
Length = 565
Score = 30.7 bits (66), Expect = 6.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 401 DWIHPDIRQRMLELYDKKLTKEGY 330
DWIHPD+++ ++E D+ + E Y
Sbjct: 380 DWIHPDLKRIVIEYVDRIIFHENY 403
>J02770-1|AAA52455.1| 583|Homo sapiens IF protein.
Length = 583
Score = 30.7 bits (66), Expect = 6.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 401 DWIHPDIRQRMLELYDKKLTKEGY 330
DWIHPD+++ ++E D+ + E Y
Sbjct: 398 DWIHPDLKRIVIEYVDRIIFHENY 421
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,443,077
Number of Sequences: 237096
Number of extensions: 2051707
Number of successful extensions: 3924
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 3772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3924
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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