Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18d22
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    28   1.00 
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    28   1.00 
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    28   1.00 
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    28   1.00 
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...    27   3.0  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    26   4.0  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    26   4.0  

>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 198 ILTYDINSYIRNALSSKFYGNLPICCRYRRRENCFFFLFYSN--LNYSSFVLTNGFSYQ 368
           I  Y I   ++   S   Y N      +RR  N F F+F ++  L+Y S ++   F Y+
Sbjct: 241 IWVYSICHLLKQCTSVTTYENASKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYR 299


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 198 ILTYDINSYIRNALSSKFYGNLPICCRYRRRENCFFFLFYSN--LNYSSFVLTNGFSYQ 368
           I  Y I   ++   S   Y N      +RR  N F F+F ++  L+Y S ++   F Y+
Sbjct: 241 IWVYSICHLLKQCTSVTTYENASKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYR 299


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 198 ILTYDINSYIRNALSSKFYGNLPICCRYRRRENCFFFLFYSN--LNYSSFVLTNGFSYQ 368
           I  Y I   ++   S   Y N      +RR  N F F+F ++  L+Y S ++   F Y+
Sbjct: 213 IWVYSICHLLKQCTSVTTYENASKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYR 271


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 198 ILTYDINSYIRNALSSKFYGNLPICCRYRRRENCFFFLFYSN--LNYSSFVLTNGFSYQ 368
           I  Y I   ++   S   Y N      +RR  N F F+F ++  L+Y S ++   F Y+
Sbjct: 241 IWVYSICHLLKQCTSVTTYENASKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYR 299


>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 552 FFLYSNHAMNYQCYRYNTSFPGTMPMQPVFMNTDKNY 442
           FF  ++  M    +++   FPGT  ++   + T KNY
Sbjct: 183 FFYTTDRVMTCSFHKFGEYFPGTGHIKDTGIGTGKNY 219


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -1

Query: 579 LICHFTNTVFFLYSNHAMNYQCYRYNTSFPGTMPMQPVFMNTDKNYIGI 433
           L C F    +  +    +NY    +NTS P ++P Q +  + ++  I I
Sbjct: 416 LNCLFEEKKYMKHFISWLNYAIVEFNTSEPSSIPPQEIIEHINETVIYI 464


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +3

Query: 201 LTYDINSYIRNALSSKFYGNLPICCRYRRRENCFFFLFYSNLNYSSFVLTNGFS 362
           +TY+++ +I    SS F+ +L +   Y+   +  FF+ Y  LN +   L   +S
Sbjct: 7   VTYNLSFFISFTFSSIFFSSLILFLVYKSVLSKLFFIKYLMLNLTKVGLRRFWS 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,331,892
Number of Sequences: 5004
Number of extensions: 45521
Number of successful extensions: 77
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)