Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18d22
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U76402-1|AAB39734.1|  777|Caenorhabditis elegans degenerin protein.    28   4.9  
U40798-3|AAA81473.2|  777|Caenorhabditis elegans Uncoordinated p...    28   4.9  

>Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical
           protein F16A11.1 protein.
          Length = 673

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 465 FMNTDKNYIGICKLFNSIKVHLFIKIMVFL 376
           F  T +N I ICK+F  +  H  IK+  +L
Sbjct: 280 FAQTRENQISICKMFTEMTTHPLIKMEEYL 309


>U76402-1|AAB39734.1|  777|Caenorhabditis elegans degenerin protein.
          Length = 777

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +3

Query: 243 SKFYGNLPICCRYRRRENCFFFLFYSNLNYSSFVLTNGFS 362
           S  + +   C  Y R+   +  ++Y  LN+ S   T G++
Sbjct: 647 SDIFNDTEACTEYYRQNTAYIEIYYEQLNFESLKETAGYT 686


>U40798-3|AAA81473.2|  777|Caenorhabditis elegans Uncoordinated
           protein 8 protein.
          Length = 777

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +3

Query: 243 SKFYGNLPICCRYRRRENCFFFLFYSNLNYSSFVLTNGFS 362
           S  + +   C  Y R+   +  ++Y  LN+ S   T G++
Sbjct: 647 SDIFNDTEACTEYYRQNTAYIEIYYEQLNFESLKETAGYT 686


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,691,742
Number of Sequences: 27780
Number of extensions: 248385
Number of successful extensions: 480
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)