Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18d21
(831 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 178 9e-46
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 118 1e-27
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 66 8e-12
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 46 5e-06
SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr 1|||M... 29 1.1
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 27 2.5
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 7.5
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 7.5
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 178 bits (433), Expect = 9e-46
Identities = 82/95 (86%), Positives = 88/95 (92%)
Frame = -3
Query: 829 TQGLXFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEITDKLG 650
TQG+ FVVDSNDRERI EA EEL RML+EDELRDA+LL+FANKQDLPNAMNAAEITDKLG
Sbjct: 85 TQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLG 144
Query: 649 LHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 545
LHSLR+R WYIQATCATSGDGLYEGL+WLS LKN
Sbjct: 145 LHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKN 179
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 118 bits (283), Expect = 1e-27
Identities = 55/94 (58%), Positives = 70/94 (74%)
Frame = -3
Query: 829 TQGLXFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEITDKLG 650
T+GL FVVDS D RI EAR+EL R++S+ E+RD +LL+ ANKQDLP A++ A+ITD L
Sbjct: 89 TKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQITDVLQ 148
Query: 649 LHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 548
L L++R W +Q TCA +GDGL EGL WLS K
Sbjct: 149 LDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAK 182
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 65.7 bits (153), Expect = 8e-12
Identities = 31/94 (32%), Positives = 55/94 (58%)
Frame = -3
Query: 829 TQGLXFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEITDKLG 650
T+ + +VVDS D R+ E R L +L E++L +L+ ANK D+ A+++ EI+ L
Sbjct: 84 TEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILN 143
Query: 649 LHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 548
+ ++ +W I + A +G + + + WL+N LK
Sbjct: 144 ISKYKSSHWRIFSVSALTGLNIKDAISWLANDLK 177
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 46.4 bits (105), Expect = 5e-06
Identities = 23/60 (38%), Positives = 36/60 (60%)
Frame = -3
Query: 823 GLXFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLH 644
G+ ++VD D ER+ E++ EL +L+ +EL LI NK D P A++ E+ LGL+
Sbjct: 90 GIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAISEDELKAALGLY 149
>SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 28.7 bits (61), Expect = 1.1
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Frame = -3
Query: 805 DSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQ------DLPNAMNAAEITDKLGL- 647
D ND + + R+ +++L + VL + KQ +L +A N E+ + L
Sbjct: 46 DENDSHSMATIKSHFERLKRDEQLLNGVLKKYDAKQEVLSPEELRDAQNFLEMQEANSLD 105
Query: 646 HSLRNRNWYIQATCATSGDGLYEG--LDWLSNQLKN-ANR*PYVRQLADKS 503
+S+R N ++ AT D Y+ L ++N++ A P++ Q+ K+
Sbjct: 106 NSIRGTNELLERAYATREDFDYQNSVLGNVTNRINGAAMSIPFINQILRKT 156
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 340 LKYCFSKYYINYVYLNAINGMQINSVQ 260
L YC Y+INY+ ++IN ++ +Q
Sbjct: 33 LSYCCVSYFINYLDRSSINNAYLSGMQ 59
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.8 bits (54), Expect = 7.5
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = -3
Query: 796 DRERIGEAREELMRMLSEDELRDAVL----LIFANKQDLPNAMNAAEITDKLGLHSLRNR 629
D E+ + REE +R+L E +DA + + +DL + ++ A+++ K +S
Sbjct: 405 DEEKKKKEREEQVRLLQESADKDAEMNEASTATSENEDLKDDLSLADLSSKKTANSQATE 464
Query: 628 N 626
N
Sbjct: 465 N 465
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 25.8 bits (54), Expect = 7.5
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 576 PSYSPSPEVAHVAWMYQLRLRSECRPSL-SVISAAFIAFGKSCLFA 710
P+ SP PEV+H W+ L P L S + IAF CL A
Sbjct: 16 PNSSPDPEVSHKLWVSSLNKFQYTLPLLISNFAGLGIAF-IYCLIA 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,385,375
Number of Sequences: 5004
Number of extensions: 71511
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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