Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18d19
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    36   0.005
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    32   0.089
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    32   0.12 
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    29   0.83 
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    29   0.83 
SPAC1B3.02c |||transcription elongation factor, Elf1 family|Schi...    28   1.9  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    28   1.9  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    28   1.9  
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote...    27   3.3  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    27   3.3  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    27   4.4  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   5.8  
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas...    26   5.8  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.8  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    26   7.7  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    26   7.7  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +2

Query: 290 CFKCFKFNHSAKICNSKQKCSICGG-EHLYKECDKPTE-ICCTNCSGP-HLAISKVCP 454
           C+ C  + H A+ C    KC  CG   H   EC + ++   C  C+ P H+A++   P
Sbjct: 118 CYACGSYGHQARDCTMGVKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNCTSP 175



 Score = 29.5 bits (63), Expect = 0.63
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
 Frame = +2

Query: 278 PLQQCFKCFKFNHSAKICNSKQKCSICGGE-HLYKECDKP-TEICCTNC-SGPHLAISKV 448
           P  +C+ C +  H A+ C     C  C    H   EC +P  E  C  C +  HL   + 
Sbjct: 15  PGPRCYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLV--RD 72

Query: 449 CP 454
           CP
Sbjct: 73  CP 74


>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 32.3 bits (70), Expect = 0.089
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 12/66 (18%)
 Frame = +2

Query: 290 CFKCFKFNHSAKICNSK-----QKCSIC-GGEHLYKECDK------PTEICCTNCSGPHL 433
           CF+C    HS   C+ K      KC IC    HL  +C++      P   CC  CS  H 
Sbjct: 102 CFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVH- 160

Query: 434 AISKVC 451
            ++K C
Sbjct: 161 HLAKDC 166


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
 Frame = +2

Query: 551 PTSKTPIYNTVNK-SVYNSVNKPLYNSVNKPVNTHVDNVNKQQDLLPLENIKNQIVSNND 727
           P+SK  I    N  S   S +   Y +V+   N H D   K     P  N +    S ND
Sbjct: 182 PSSKETIPKVSNSNSSDTSTDDQAYLNVSVSENEHADRSIKTHSSAPPLNQQKSSTSVND 241

Query: 728 VL---MALVQTLVELGNKGDNSPTTVENN 805
            +   + LV++  +LG+   N+ +T + N
Sbjct: 242 AVSKAIQLVKSTSDLGSLSTNTSSTAQKN 270


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +2

Query: 554 TSKTPIYNTVNKSVYNSVN--KPLYNSVNKPVNTHVDNVN 667
           T  T I  +  +SV N ++  KPL N++NK VN   DN+N
Sbjct: 450 TDFTAIVKSYFESVDNPLDIPKPLTNTINKFVNQSKDNLN 489


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 26/88 (29%), Positives = 42/88 (47%)
 Frame = +2

Query: 506 ATSTKQVNNNDFPPLPTSKTPIYNTVNKSVYNSVNKPLYNSVNKPVNTHVDNVNKQQDLL 685
           ATST+  N  D  P  +S    Y+T   S + S  + +Y ++NK ++T ++   K  D +
Sbjct: 425 ATSTRSFN--DISPSSSSS---YSTAQISTFPSNQESIYKNINKRLST-LEERKKAFDEI 478

Query: 686 PLENIKNQIVSNNDVLMALVQTLVELGN 769
            +E I      +N   M   Q L EL +
Sbjct: 479 -VEKILTNYGKHNAKNMNFTQLLHELNS 505


>SPAC1B3.02c |||transcription elongation factor, Elf1
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 17/51 (33%), Positives = 20/51 (39%)
 Frame = +2

Query: 275 PPLQQCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKPTEICCTNCSGP 427
           PPL   F C   NH   +  S  K S  G  H  K C +  +   T  S P
Sbjct: 17  PPLDTTFTCLFCNHEKSVSCSLDKQSGVGNLHC-KICGQSHQCLITALSAP 66


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 692 ENIKNQIVSNNDVLMALVQTLVELGNKGDNSPTTVENN*GY 814
           +NI  Q+V+N +V M LV T + L  K +  P T + + G+
Sbjct: 20  QNIAKQVVNNENVFMKLVMTRM-LDGKTEVIPLTTDVHNGF 59


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +2

Query: 530 NNDFPPLPTSKTPIYNTVNKSVYNSVNKPLYNSVNKPVNTHVDNVNKQQDLLP-LENIKN 706
           N DFP  PT+ +P  ++ N SV  +   P     + P+ + ++  +      P L+N+K+
Sbjct: 86  NQDFPSNPTAHSP-SSSSNDSVITATGVPDGILRDSPIVSALEPPSSNSSSSPQLQNLKH 144

Query: 707 QIVS 718
           Q+ S
Sbjct: 145 QLSS 148


>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
           But1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 789 VGELSPLLPSSTNVCTRAISTSLLETI*FLIFSKG 685
           +G    +LP  T  C   + T++ ET+ FL    G
Sbjct: 206 IGRRRDILPIRTTTCVSTLITAVQETVRFLAIENG 240


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 88  VSWNESYYSSLFNLRSRNES 29
           V WN + Y  L NL+S N S
Sbjct: 381 VHWNSTVYQELLNLKSNNSS 400


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = +2

Query: 581 VNKSVYNSVNKPLYNSVN-----KPVNTHVDNVNKQQDLLPLENIKNQIVS 718
           + K+  N     L+ S+N     +PV    D +     L P++N KN++VS
Sbjct: 827 ITKTSLNREKPALHGSINLKHSTRPVVPIADGIYASTTLHPIDNAKNRLVS 877


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
 Frame = +2

Query: 89  ISNKELYSRLSSIYEIIAIRRFTKKVGHEHVPLQTVSITF-----LSNILPDNVQYDLFS 253
           I+   L SRL SI     +RR T   G       TVS++F     +++++P+  + +L  
Sbjct: 81  ITINHLVSRLPSIVLPFLVRRLTTIAGRLDRFRSTVSVSFDCLNWVNSMIPNLPEKEL-Q 139

Query: 254 YRVFEYIPPLQQCF 295
           Y + E + PLQ  F
Sbjct: 140 YWILELL-PLQSSF 152


>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
           Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 778 ITLIA*LHQCLYKGHKYIIVGDNLI 704
           +TLIA  HQ + +G+KY     NL+
Sbjct: 228 LTLIARAHQLVQEGYKYHFADKNLV 252


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 515 TKQVNNNDFPPLPTSKTPIYNTVNKSVYNSVNKPLYNSVNKPVNTHVDNV 664
           T Q+ N+    L   +  + N VN S++ + N+P   S+N  ++   DNV
Sbjct: 447 TLQLQNSPLSKLVPQE--VGNKVNDSIHTTSNQPSKFSLNPSISLKGDNV 494


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 666 FTLSTCVFTGLFTELY 619
           FTLS C+F GLF+  +
Sbjct: 193 FTLSRCIFQGLFSTFF 208


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +2

Query: 548 LPTSKTPIYNTVNKSVYNSVNKPLYNSVNKPVN--THVDNVNKQQDLLPLEN 697
           L TSK  ++ T     + + N+P + S+N P    T     N Q DL P  N
Sbjct: 297 LSTSKPEVHETEGYCPHKTGNRPGFPSLNIPRTRPTTAGIANTQFDLEPYRN 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,229,518
Number of Sequences: 5004
Number of extensions: 65934
Number of successful extensions: 267
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)