Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18d19
(847 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ302712-1|CAC16870.1| 433|Drosophila melanogaster gag protein. 67 2e-11
X68130-1|CAA48237.1| 943|Drosophila melanogaster protein ( D.me... 60 3e-09
U06920-1|AAC17188.3| 921|Drosophila melanogaster probable gag p... 60 3e-09
AJ635224-1|CAG25619.1| 951|Drosophila melanogaster gag protein ... 60 5e-09
AJ542581-1|CAD65868.3| 965|Drosophila melanogaster gag protein ... 59 9e-09
X68816-2|CAA48714.1| 536|Drosophila melanogaster T-element prot... 56 5e-08
S56442-2|AAA14198.2| 536|Drosophila melanogaster Orf2 protein. 56 5e-08
AF237761-1|AAF81410.1| 501|Drosophila melanogaster unknown prot... 56 5e-08
AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein ... 55 1e-07
U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative singl... 53 6e-07
AY561850-1|AAS68533.1| 970|Drosophila melanogaster gag protein ... 53 6e-07
AY035777-1|AAK77970.1| 257|Drosophila melanogaster gag protein ... 53 6e-07
AJ566116-1|CAD92792.1| 970|Drosophila melanogaster gag protein ... 53 6e-07
M14954-1|AAA70221.1| 426|Drosophila melanogaster putative ORF1 ... 52 1e-06
M38643-1|AAA28939.1| 549|Drosophila melanogaster protein ( D.me... 48 2e-05
M22874-1|AAA28674.1| 583|Drosophila melanogaster nucleic acid-b... 48 2e-05
M17214-1|AAA28507.1| 122|Drosophila melanogaster protein ( D.me... 45 1e-04
AY118596-1|AAM49965.1| 165|Drosophila melanogaster LD48005p pro... 39 0.010
AY075371-1|AAL68216.1| 165|Drosophila melanogaster GM14667p pro... 39 0.010
AE013599-3513|AAN16117.1| 165|Drosophila melanogaster CG3800-PA... 39 0.010
X17551-1|CAA35586.1| 565|Drosophila melanogaster ORF1 for putat... 38 0.023
BT014916-1|AAT47767.1| 409|Drosophila melanogaster RE14563p pro... 38 0.023
AJ278684-1|CAB99191.1| 488|Drosophila melanogaster gag-like pro... 38 0.023
X51968-1|CAA36226.1| 471|Drosophila melanogaster protein ( Dros... 37 0.040
AY118707-1|AAM50567.1| 186|Drosophila melanogaster AT22983p pro... 36 0.053
AJ487856-1|CAD32253.1| 1830|Drosophila melanogaster hypothetical... 34 0.21
AE014296-3405|AAZ66070.1| 165|Drosophila melanogaster CG33912-P... 31 1.5
U23420-1|AAB03640.1| 1607|Drosophila melanogaster unknown protein. 31 2.0
AF210453-1|AAF21041.1| 4559|Drosophila melanogaster dynein heavy... 30 3.5
AF136253-1|AAF21334.1| 579|Drosophila melanogaster dynein protein. 30 3.5
AF136252-1|AAF21333.1| 579|Drosophila melanogaster dynein protein. 30 3.5
AF136251-1|AAF21332.1| 579|Drosophila melanogaster dynein protein. 30 3.5
AF136250-1|AAF21331.1| 579|Drosophila melanogaster dynein protein. 30 3.5
AF136249-1|AAF21330.1| 579|Drosophila melanogaster dynein protein. 30 3.5
AF136248-1|AAF21329.1| 579|Drosophila melanogaster dynein protein. 30 3.5
AF136247-1|AAF21328.1| 579|Drosophila melanogaster dynein protein. 30 3.5
AF136246-1|AAF21327.1| 579|Drosophila melanogaster dynein protein. 30 3.5
AF136245-1|AAF21326.1| 579|Drosophila melanogaster dynein protein. 30 3.5
AF136244-1|AAF21325.1| 579|Drosophila melanogaster dynein protein. 30 3.5
AF136243-1|AAF21324.1| 579|Drosophila melanogaster dynein protein. 30 3.5
>AJ302712-1|CAC16870.1| 433|Drosophila melanogaster gag protein.
Length = 433
Score = 67.3 bits (157), Expect = 2e-11
Identities = 40/124 (32%), Positives = 55/124 (44%), Gaps = 1/124 (0%)
Frame = +2
Query: 86 NISNKELYSRLSSIYEIIAIRRFTKKVGHEHVPLQTVSITFLSNILPDNVQYDLFSYRVF 265
NI E+ L S + ++ +FTK + P V +TF LP + + +V
Sbjct: 137 NIPENEIVEELKS-QNVHSVFKFTKMIDGTPKPFGKVLVTFDRFTLPSKLTVSWHTVKVS 195
Query: 266 EYIPPLQQCFKCFKFNHSAKICNSKQKCSICG-GEHLYKECDKPTEICCTNCSGPHLAIS 442
EYIP +C C H++K C + C C HL C T I C NC+G H A S
Sbjct: 196 EYIPNPMRCKSCQLLGHTSKHCKNPPACVSCNLAPHLPVPC---TRIFCANCTGQHPASS 252
Query: 443 KVCP 454
CP
Sbjct: 253 PECP 256
>X68130-1|CAA48237.1| 943|Drosophila melanogaster protein (
D.melanogaster DNA sequenceof Het-A transposable element
9D4. ).
Length = 943
Score = 60.5 bits (140), Expect = 3e-09
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 287 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKP--TEICCTNCSGPHLAISKVCP 454
QC++C F H+ C +C C GEHL C KP T C NCSG H++ K CP
Sbjct: 647 QCYRCQGFRHAKNSCMRPPRCMKCAGEHLSSCCTKPRTTPATCVNCSGQHISAYKGCP 704
>U06920-1|AAC17188.3| 921|Drosophila melanogaster probable gag
protein protein.
Length = 921
Score = 60.5 bits (140), Expect = 3e-09
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 287 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKP--TEICCTNCSGPHLAISKVCP 454
QC++C F H+ C +C C GEHL C KP T C NCSG H++ K CP
Sbjct: 625 QCYRCQGFRHAKNSCMRPPRCMKCAGEHLSSCCTKPRTTPATCVNCSGQHISAYKGCP 682
>AJ635224-1|CAG25619.1| 951|Drosophila melanogaster gag protein
protein.
Length = 951
Score = 59.7 bits (138), Expect = 5e-09
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 287 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKP--TEICCTNCSGPHLAISKVCP 454
QC++C F H+ C +C C G+HL C KP T C NCSG H++ K CP
Sbjct: 655 QCYRCQGFRHAKNSCMKPPRCMKCAGDHLSSCCTKPRSTPATCVNCSGEHISAYKGCP 712
>AJ542581-1|CAD65868.3| 965|Drosophila melanogaster gag protein
protein.
Length = 965
Score = 58.8 bits (136), Expect = 9e-09
Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 287 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKP--TEICCTNCSGPHLAISKVCP 454
QC++C F HS C +C C G HL C KP T C NCSG H++ K CP
Sbjct: 662 QCYRCQGFRHSKNSCMRPPRCMKCAGGHLSSCCTKPRTTPATCVNCSGEHISAYKGCP 719
>X68816-2|CAA48714.1| 536|Drosophila melanogaster T-element
protein.
Length = 536
Score = 56.4 bits (130), Expect = 5e-08
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 287 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKP--TEICCTNCSGPHLAISKVCP 454
QC++C F H+ C +C GEHL C KP T C NCSG H++ K CP
Sbjct: 240 QCYRCQGFRHAKNSCMRPPRCMKSAGEHLSSCCTKPRTTPATCVNCSGQHISAYKGCP 297
>S56442-2|AAA14198.2| 536|Drosophila melanogaster Orf2 protein.
Length = 536
Score = 56.4 bits (130), Expect = 5e-08
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 287 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKP--TEICCTNCSGPHLAISKVCP 454
QC++C F H+ C +C GEHL C KP T C NCSG H++ K CP
Sbjct: 240 QCYRCQGFRHAKNSCMRPPRCMKSAGEHLSSCCTKPRTTPATCVNCSGQHISAYKGCP 297
>AF237761-1|AAF81410.1| 501|Drosophila melanogaster unknown
protein.
Length = 501
Score = 56.4 bits (130), Expect = 5e-08
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 287 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKP-TEIC-CTNCSGPHLAISKVC 451
QC +C + H+AK C C C GEH K+C +P E+C C NC G H A K C
Sbjct: 286 QCHRCQQIGHTAKYCRKAHICVKCAGEHPAKDCTRPRIELCTCYNCGGQHPANYKGC 342
>AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein
protein.
Length = 1047
Score = 54.8 bits (126), Expect = 1e-07
Identities = 43/183 (23%), Positives = 71/183 (38%), Gaps = 11/183 (6%)
Frame = +2
Query: 287 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKPTEI--CCTNCSGPHLAISKVCPXX 460
QC +C F H+ C + KC CG H C KP + C NC+G H++ K CP
Sbjct: 794 QCHRCQCFGHTKNYCRNPFKCMKCGQLHASVSCTKPKNLPATCANCNGSHVSSYKGCPVF 853
Query: 461 XXXXXXXXXXXTYA--SATSTKQVNNNDFP-PLPT------SKTPIYNTVNKSVYNSVNK 613
+ S + Q N P P PT +K P + + +++ N+
Sbjct: 854 QEAKQRLSINKIQSLHSQPTHLQTPRNKHPYPKPTHIQTPLNKQPYTHPLPRTLVNNTKL 913
Query: 614 PLYNSVNKPVNTHVDNVNKQQDLLPLENIKNQIVSNNDVLMALVQTLVELGNKGDNSPTT 793
P K ++ ++NK+ + + + K + ++ V +E K NS
Sbjct: 914 PAKRIQGKKISQRNLSINKRLNRIRTLDRKPRNETSPPTTSKKVLASLEESRKNPNSALN 973
Query: 794 VEN 802
N
Sbjct: 974 PAN 976
>U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative
single-stranded nucleicacid binding protein protein.
Length = 1043
Score = 52.8 bits (121), Expect = 6e-07
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 287 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKPTEI--CCTNCSGPHLAISKVCP 454
QC +C F H+ C + KC CG H C KP + C NC+G H++ K CP
Sbjct: 794 QCHRCQCFGHTKNYCRNPFKCMKCGQLHATVSCTKPKNLPATCANCNGSHVSSYKGCP 851
>AY561850-1|AAS68533.1| 970|Drosophila melanogaster gag protein
protein.
Length = 970
Score = 52.8 bits (121), Expect = 6e-07
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 287 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKPTEI--CCTNCSGPHLAISKVCP 454
QC +C F H+ C + KC CG H C KP + C NC+G H++ K CP
Sbjct: 717 QCHRCQCFGHTKNYCRNPFKCMKCGQLHATVSCTKPKNLPATCANCNGSHVSSYKGCP 774
>AY035777-1|AAK77970.1| 257|Drosophila melanogaster gag protein
protein.
Length = 257
Score = 52.8 bits (121), Expect = 6e-07
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 287 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKPTEI--CCTNCSGPHLAISKVCP 454
QC +C F H+ C + KC CG H C KP + C NC+G H++ K CP
Sbjct: 4 QCHRCQCFGHTKNYCRNPFKCMKCGQLHATVSCTKPKNLPATCANCNGSHVSSYKGCP 61
>AJ566116-1|CAD92792.1| 970|Drosophila melanogaster gag protein
protein.
Length = 970
Score = 52.8 bits (121), Expect = 6e-07
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 287 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKPTEI--CCTNCSGPHLAISKVCP 454
QC +C F H+ C + KC CG H C KP + C NC+G H++ K CP
Sbjct: 717 QCHRCQCFGHTKNYCRNPFKCMKCGQLHATVSCTKPKNLPATCANCNGSHVSSYKGCP 774
>M14954-1|AAA70221.1| 426|Drosophila melanogaster putative ORF1
protein.
Length = 426
Score = 52.0 bits (119), Expect = 1e-06
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Frame = +2
Query: 194 VSITFLSNILPDNVQYDLFSYRVFEYIPPLQQCFKCFKFNHSAKICNSKQKCSICGGEHL 373
+ ITF S+ LP+ V+ + RV +YIP +C KC +F H IC S + C C
Sbjct: 156 IIITFESHKLPEIVRIGYETVRVRDYIPLPLRCKKCLRFGHPTPICKSVETCINCSETKH 215
Query: 374 YKECDKPT-EICCTNC-SGP-----HLAISKVCP 454
+ +K T E C NC + P H I + CP
Sbjct: 216 TNDGEKCTNEKNCLNCRNNPELDHQHSPIDRKCP 249
>M38643-1|AAA28939.1| 549|Drosophila melanogaster protein (
D.melanogaster mobileelement jockey gag-specific protein
gene, complete cds.).
Length = 549
Score = 48.0 bits (109), Expect = 2e-05
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 281 LQQCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKPTEIC-CTNCSGPHLAISKVCP 454
L QC +C F HS C C C G H+ +++C C NC G H++ K CP
Sbjct: 368 LLQCQRCQIFGHSKNYCAQDPICGKCSGPHMTGFALCISDVCLCINCGGDHVSTDKSCP 426
>M22874-1|AAA28674.1| 583|Drosophila melanogaster nucleic
acid-binding protiein protein.
Length = 583
Score = 48.0 bits (109), Expect = 2e-05
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 281 LQQCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKPTEIC-CTNCSGPHLAISKVCP 454
L QC +C F HS C C C G H+ +++C C NC G H++ K CP
Sbjct: 402 LLQCQRCQIFGHSKNYCAQDPICGKCSGPHMTGFALCISDVCLCINCGGDHVSTDKSCP 460
>M17214-1|AAA28507.1| 122|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 122
Score = 45.2 bits (102), Expect = 1e-04
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = +2
Query: 287 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKEC----DKPTEICCTNCSGPHLAISKVCP 454
QC C ++ H+ C C +CG H K+C + E C NC G H A + CP
Sbjct: 39 QCTNCQEYGHTRSYCTLAPVCVVCGDLHDSKQCQINKENACEKKCNNCGGNHTANYRGCP 98
>AY118596-1|AAM49965.1| 165|Drosophila melanogaster LD48005p
protein.
Length = 165
Score = 38.7 bits (86), Expect = 0.010
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 284 QQCFKCFKFNHSAKIC-NSKQKCSICGG-EHLYKECDKPTEICCTNCS 421
++C+KC +F H A+ C ++C C G H+ K+C + C C+
Sbjct: 55 EKCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQADNPTCYRCN 102
>AY075371-1|AAL68216.1| 165|Drosophila melanogaster GM14667p
protein.
Length = 165
Score = 38.7 bits (86), Expect = 0.010
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 284 QQCFKCFKFNHSAKIC-NSKQKCSICGG-EHLYKECDKPTEICCTNCS 421
++C+KC +F H A+ C ++C C G H+ K+C + C C+
Sbjct: 55 EKCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQADNPTCYRCN 102
>AE013599-3513|AAN16117.1| 165|Drosophila melanogaster CG3800-PA
protein.
Length = 165
Score = 38.7 bits (86), Expect = 0.010
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 284 QQCFKCFKFNHSAKIC-NSKQKCSICGG-EHLYKECDKPTEICCTNCS 421
++C+KC +F H A+ C ++C C G H+ K+C + C C+
Sbjct: 55 EKCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQADNPTCYRCN 102
>X17551-1|CAA35586.1| 565|Drosophila melanogaster ORF1 for putative
RNA bindingprotein protein.
Length = 565
Score = 37.5 bits (83), Expect = 0.023
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Frame = +2
Query: 287 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKEC----DKPTEICCTNCSGPHLAISKVC 451
QC C ++ H+ C K C +C H C D + C+NC H A + C
Sbjct: 383 QCTNCQEYGHTKAYCTLKSVCVVCSEPHTTANCPKNKDDKSVKKCSNCGEKHTANYRGC 441
>BT014916-1|AAT47767.1| 409|Drosophila melanogaster RE14563p
protein.
Length = 409
Score = 37.5 bits (83), Expect = 0.023
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Frame = +2
Query: 287 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKEC----DKPTEICCTNCSGPHLAISKVC 451
QC C ++ H+ C K C +C H C D + C+NC H A + C
Sbjct: 227 QCTNCQEYGHTKAYCTLKSVCVVCSEPHTTANCPKNKDDKSVKKCSNCGEKHTANYRGC 285
>AJ278684-1|CAB99191.1| 488|Drosophila melanogaster gag-like
protein protein.
Length = 488
Score = 37.5 bits (83), Expect = 0.023
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Frame = +2
Query: 257 RVFEYIPPLQQCFKCFKFNHSAKICNS--KQKCSICGGEHLYKE--CDKPTE--ICCTNC 418
R+ + + P++ CF+C +F H A C S + C + GEH +K C P IC ++
Sbjct: 399 RIAQDVRPIR-CFRCLEFGHRAPYCKSVDRSDCCLRCGEHGHKAKGCVAPPRCLICSSDV 457
Query: 419 SGPHLAISKVCP 454
H CP
Sbjct: 458 DKNHATGGFACP 469
>X51968-1|CAA36226.1| 471|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 471
Score = 36.7 bits (81), Expect = 0.040
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Frame = +2
Query: 290 CFKCFKFNHSAKICNSKQK-CSICGGE-HLYKECDKPTEICCTNC-----SGPHLAISKV 448
C +C F+H C K+ C CG + H +C P + C NC H +S
Sbjct: 399 CHRCVGFDHKVSECRQKESVCRQCGQQGHTAAKCQNPVD--CRNCRHRGQPSGHYMLSNA 456
Query: 449 CP 454
CP
Sbjct: 457 CP 458
>AY118707-1|AAM50567.1| 186|Drosophila melanogaster AT22983p
protein.
Length = 186
Score = 36.3 bits (80), Expect = 0.053
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 6/138 (4%)
Frame = +2
Query: 26 RAFIPAAQIEKTGIIRFVPANISNKELYSRLSSIYEIIAIRRFTKKVGHEHVPLQTVSIT 205
RA + A K +IR + + EL S L + EI A K + +T I
Sbjct: 10 RASLRALTQSKVFLIRDLDELTTEDELKSALEAQAEIPAAVVAIKSLRKTQYGGKTAVIA 69
Query: 206 FLSNILPDNVQYDL--FSYRVFEYIPPLQQCFKCFKFNHSAKICNS----KQKCSICGGE 367
+N+ ++ +S + + + P Q+CF+C + H A C S Q C CG
Sbjct: 70 VPANLADPLIKRGRVGWSQCLIKELEPRQRCFRCLEEGHIAAHCRSTVDRSQCCFRCGTA 129
Query: 368 HLYKECDKPTEICCTNCS 421
EC P E C C+
Sbjct: 130 GHKAEC--PKEAKCFLCA 145
>AJ487856-1|CAD32253.1| 1830|Drosophila melanogaster hypothetical
protein protein.
Length = 1830
Score = 34.3 bits (75), Expect = 0.21
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +2
Query: 269 YIPPLQQCFKCFKFNHSAKICNSKQKCSICGGEH 370
YI Q C CF H + C S C C G H
Sbjct: 457 YIKKKQLCLNCFARGHQLRDCTSMHSCFTCKGRH 490
>AE014296-3405|AAZ66070.1| 165|Drosophila melanogaster CG33912-PA
protein.
Length = 165
Score = 31.5 bits (68), Expect = 1.5
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +3
Query: 189 KL*ALLSYLIFYQTMFNTTYSLIEFLNIYHHCNNVSNVSSLTTQLKYVTVNKNVLFVEV 365
KL +S+L++ F YSL+EF N+ C ++ +L +VN++ +V +
Sbjct: 4 KLILFISFLMYSTCYFTEVYSLVEFANV--QCESLDKDFALIEYCYLKSVNRSYKYVSI 60
>U23420-1|AAB03640.1| 1607|Drosophila melanogaster unknown protein.
Length = 1607
Score = 31.1 bits (67), Expect = 2.0
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 224 PDNVQYDLFSYRVFEYIPPLQQCFKCFKFNHSAKICNSKQKCSICGGEH 370
P + D+ S R +++ + CF C H C S+ C IC +H
Sbjct: 195 PQFIALDIASRR--DFLKSRKLCFNCLSPAHMVGNCTSRHTCRICRRKH 241
>AF210453-1|AAF21041.1| 4559|Drosophila melanogaster dynein heavy
chain protein.
Length = 4559
Score = 30.3 bits (65), Expect = 3.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 554 TSKTPIYNTVNKSVYNSVNKPLYNSVNKPVNTH 652
T K+ ++ T+NK+ N KP YN +N T+
Sbjct: 2226 TGKSEVWKTLNKTYQNQKRKPHYNDLNPKAVTN 2258
>AF136253-1|AAF21334.1| 579|Drosophila melanogaster dynein protein.
Length = 579
Score = 30.3 bits (65), Expect = 3.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 554 TSKTPIYNTVNKSVYNSVNKPLYNSVNKPVNTH 652
T K+ ++ T+NK+ N KP YN +N T+
Sbjct: 530 TGKSEVWKTLNKTYQNQKRKPHYNDLNPKAVTN 562
>AF136252-1|AAF21333.1| 579|Drosophila melanogaster dynein protein.
Length = 579
Score = 30.3 bits (65), Expect = 3.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 554 TSKTPIYNTVNKSVYNSVNKPLYNSVNKPVNTH 652
T K+ ++ T+NK+ N KP YN +N T+
Sbjct: 530 TGKSEVWKTLNKTYQNQKRKPHYNDLNPKAVTN 562
>AF136251-1|AAF21332.1| 579|Drosophila melanogaster dynein protein.
Length = 579
Score = 30.3 bits (65), Expect = 3.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 554 TSKTPIYNTVNKSVYNSVNKPLYNSVNKPVNTH 652
T K+ ++ T+NK+ N KP YN +N T+
Sbjct: 530 TGKSEVWKTLNKTYQNQKRKPHYNDLNPKAVTN 562
>AF136250-1|AAF21331.1| 579|Drosophila melanogaster dynein protein.
Length = 579
Score = 30.3 bits (65), Expect = 3.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 554 TSKTPIYNTVNKSVYNSVNKPLYNSVNKPVNTH 652
T K+ ++ T+NK+ N KP YN +N T+
Sbjct: 530 TGKSEVWKTLNKTYQNQKRKPHYNDLNPKAVTN 562
>AF136249-1|AAF21330.1| 579|Drosophila melanogaster dynein protein.
Length = 579
Score = 30.3 bits (65), Expect = 3.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 554 TSKTPIYNTVNKSVYNSVNKPLYNSVNKPVNTH 652
T K+ ++ T+NK+ N KP YN +N T+
Sbjct: 530 TGKSEVWKTLNKTYQNQKRKPHYNDLNPKAVTN 562
>AF136248-1|AAF21329.1| 579|Drosophila melanogaster dynein protein.
Length = 579
Score = 30.3 bits (65), Expect = 3.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 554 TSKTPIYNTVNKSVYNSVNKPLYNSVNKPVNTH 652
T K+ ++ T+NK+ N KP YN +N T+
Sbjct: 530 TGKSEVWKTLNKTYQNQKRKPHYNDLNPKAVTN 562
>AF136247-1|AAF21328.1| 579|Drosophila melanogaster dynein protein.
Length = 579
Score = 30.3 bits (65), Expect = 3.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 554 TSKTPIYNTVNKSVYNSVNKPLYNSVNKPVNTH 652
T K+ ++ T+NK+ N KP YN +N T+
Sbjct: 530 TGKSEVWKTLNKTYQNQKRKPHYNDLNPKAVTN 562
>AF136246-1|AAF21327.1| 579|Drosophila melanogaster dynein protein.
Length = 579
Score = 30.3 bits (65), Expect = 3.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 554 TSKTPIYNTVNKSVYNSVNKPLYNSVNKPVNTH 652
T K+ ++ T+NK+ N KP YN +N T+
Sbjct: 530 TGKSEVWKTLNKTYQNQKRKPHYNDLNPKAVTN 562
>AF136245-1|AAF21326.1| 579|Drosophila melanogaster dynein protein.
Length = 579
Score = 30.3 bits (65), Expect = 3.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 554 TSKTPIYNTVNKSVYNSVNKPLYNSVNKPVNTH 652
T K+ ++ T+NK+ N KP YN +N T+
Sbjct: 530 TGKSEVWKTLNKTYQNQKRKPHYNDLNPKAVTN 562
>AF136244-1|AAF21325.1| 579|Drosophila melanogaster dynein protein.
Length = 579
Score = 30.3 bits (65), Expect = 3.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 554 TSKTPIYNTVNKSVYNSVNKPLYNSVNKPVNTH 652
T K+ ++ T+NK+ N KP YN +N T+
Sbjct: 530 TGKSEVWKTLNKTYQNQKRKPHYNDLNPKAVTN 562
>AF136243-1|AAF21324.1| 579|Drosophila melanogaster dynein protein.
Length = 579
Score = 30.3 bits (65), Expect = 3.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 554 TSKTPIYNTVNKSVYNSVNKPLYNSVNKPVNTH 652
T K+ ++ T+NK+ N KP YN +N T+
Sbjct: 530 TGKSEVWKTLNKTYQNQKRKPHYNDLNPKAVTN 562
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,340,572
Number of Sequences: 53049
Number of extensions: 675153
Number of successful extensions: 2299
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 2166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2277
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4044853644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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