Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18d18
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    27   3.4  
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces...    26   6.0  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    25   7.9  

>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = -3

Query: 560 ILASSDSSFLNEEYCIVKRLYNSRNSQSNNIAAYITAHLLPPVAQVFHQSAGSITDLLRG 381
           +++SS+          V  +YNS  + ++ I + + A  +  +  V   S  SI DL+  
Sbjct: 35  LISSSNLESCQSSPLEVGNIYNS--TSASEILSTLDAKYITIIG-VIGSSNSSIQDLIDS 91

Query: 380 VGNGNDA 360
           VGN N+A
Sbjct: 92  VGNSNNA 98


>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = -3

Query: 611 GCAGGGRIYDFEAAW--DAILASSDSSFLNEEYCIVKRLYNSRNSQSNNIAAYITAHLLP 438
           GC+G  ++     +   D +  SS   + +EE  +      +     ++IAA   AH+L 
Sbjct: 581 GCSGYPKLLSTAVSMFEDLVRYSSHLQYYSEECSLSSESLGNSPQAFSSIAAIAAAHILD 640

Query: 437 PVAQVFHQ 414
               +F++
Sbjct: 641 KALSIFNE 648


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
            Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -1

Query: 277  YIYNYIKDIYKPYTNIYISL*DNLPI*KQTKINN 176
            YI+++  ++Y+ Y + Y+++ D   I   T  NN
Sbjct: 1080 YIHDFENNVYRKYNDEYVTVVDESEIFADTTGNN 1113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,342
Number of Sequences: 5004
Number of extensions: 35653
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)