Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18d16
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0472 - 8737955-8738580,8738704-8738767,8739090-8739239,873...    31   0.65 
07_03_0901 + 22433920-22434048,22434201-22434872                       28   6.0  
07_03_0632 - 20112297-20116562                                         28   6.0  
05_05_0276 + 23771233-23771268,23773552-23773897,23774425-237745...    28   6.0  
04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814     28   8.0  
02_05_0638 + 30547786-30547869,30547914-30548241,30548324-305483...    28   8.0  

>03_02_0472 -
           8737955-8738580,8738704-8738767,8739090-8739239,
           8739311-8739422,8739686-8739708
          Length = 324

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -1

Query: 481 PRNRRKIYQP-PRNRVTGPYKRR-SPSPYLRDRFPMWFGRNRESYN 350
           P NRR+ Y P  R R   P++RR S SPY   R P  +GR R SY+
Sbjct: 158 PYNRRRSYSPYERRRSYSPHERRQSYSPY--GRSPSPYGR-RRSYS 200



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 460 YQPPRNRVTGPY-KRRSPSPYLRDRFPMWFGRNRESYN 350
           Y P R R   PY +RRS SPY R R    + R R SY+
Sbjct: 139 YSPERERSYSPYGRRRSYSPYNRRRSYSPYER-RRSYS 175



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -1

Query: 481 PRNRRKIYQPPRNRVT-GPYKRRSPSPYLRDRFPMWF---GRNRESYNN 347
           P  RR+ Y P   R +  PY R SPSPY R R    +   G  R SY++
Sbjct: 167 PYERRRSYSPHERRQSYSPYGR-SPSPYGRRRSYSPYDTRGSRRRSYSS 214


>07_03_0901 + 22433920-22434048,22434201-22434872
          Length = 266

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 460 YQPPRNRVTGPYKRRSPSPYLRDRFPMWFG 371
           Y P R +  GP+  ++PS YLR  FP  +G
Sbjct: 49  YGPDRVKYLGPFSAQTPS-YLRGEFPGDYG 77


>07_03_0632 - 20112297-20116562
          Length = 1421

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 388  SDPVNMEKVTFF-YKGL*LDFWVVGISFSYFLDLXYVXXMXLXXPMG 525
            S P N++ + FF Y GL    WVV + +   +++ +   + +  P G
Sbjct: 927  SPPRNLQTIKFFGYTGLAFPDWVVQLRYIKVIEISHCTELQVLPPFG 973


>05_05_0276 +
           23771233-23771268,23773552-23773897,23774425-23774541,
           23774712-23774810,23774949-23775016,23775107-23775181,
           23775386-23775931,23776040-23776092,23776163-23776204,
           23776314-23776458,23776541-23776651,23777496-23777921,
           23778116-23778373
          Length = 773

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 257 WRSNIW*RRQLMMHGSHIL 313
           WRS  W  +++++HG H+L
Sbjct: 633 WRSEQWTHKRILLHGHHLL 651


>04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814
          Length = 775

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 478 RNRRKIYQPPRNRVTGPYKRRSPSPYLRDRFP 383
           R+R +   PP     G Y+RRSPSP    R P
Sbjct: 8   RSRIRGRDPPPASSGGRYRRRSPSPRRHHRAP 39


>02_05_0638 +
           30547786-30547869,30547914-30548241,30548324-30548387,
           30548493-30548676
          Length = 219

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 427 YKRRSPSPYLRDRFPMWFGRNRESYNNT 344
           Y RR  SP  +D FP  F RN+    NT
Sbjct: 165 YTRREKSPDEKDIFPTAFPRNKTPLGNT 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,399,603
Number of Sequences: 37544
Number of extensions: 217011
Number of successful extensions: 609
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)