Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18d16
         (688 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL445686-3|CAI14683.1|  913|Homo sapiens serine/arginine repetit...    31   3.8  
AL445648-2|CAH73089.1|  913|Homo sapiens serine/arginine repetit...    31   3.8  
BC036187-1|AAH36187.1|  904|Homo sapiens serine/arginine repetit...    30   6.7  
AL445686-4|CAI14682.1|  904|Homo sapiens serine/arginine repetit...    30   6.7  
AL445648-3|CAH73090.1|  904|Homo sapiens serine/arginine repetit...    30   6.7  
AF419855-1|AAP97290.1|  820|Homo sapiens Ser/Arg-related nuclear...    30   6.7  
AF048977-1|AAC09321.1|  820|Homo sapiens Ser/Arg-related nuclear...    30   6.7  
BC109117-1|AAI09118.1|  871|Homo sapiens ARS2 protein protein.         30   8.9  
AF312032-4|AAK21005.1|  876|Homo sapiens ASR2A protein.                30   8.9  
AF312032-3|AAK21006.1|  872|Homo sapiens ASR2B protein.                30   8.9  

>AL445686-3|CAI14683.1|  913|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 913

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -1

Query: 556 KXGGXYXTXRAPLXXRGSSXXHRXGPRNRRKIYQPPRNRV-TGPYKRRSPSP 404
           K G    +   P   R  S      PR RR    PPR R  + P +RRSPSP
Sbjct: 551 KSGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSP 602


>AL445648-2|CAH73089.1|  913|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 913

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -1

Query: 556 KXGGXYXTXRAPLXXRGSSXXHRXGPRNRRKIYQPPRNRV-TGPYKRRSPSP 404
           K G    +   P   R  S      PR RR    PPR R  + P +RRSPSP
Sbjct: 551 KSGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSP 602


>BC036187-1|AAH36187.1|  904|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 904

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 481 PRNRRKIYQPPRNRV-TGPYKRRSPSP 404
           PR RR    PPR R  + P +RRSPSP
Sbjct: 567 PRRRRTPTPPPRRRTPSPPPRRRSPSP 593


>AL445686-4|CAI14682.1|  904|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 904

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 481 PRNRRKIYQPPRNRV-TGPYKRRSPSP 404
           PR RR    PPR R  + P +RRSPSP
Sbjct: 567 PRRRRTPTPPPRRRTPSPPPRRRSPSP 593


>AL445648-3|CAH73090.1|  904|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 904

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 481 PRNRRKIYQPPRNRV-TGPYKRRSPSP 404
           PR RR    PPR R  + P +RRSPSP
Sbjct: 567 PRRRRTPTPPPRRRTPSPPPRRRSPSP 593


>AF419855-1|AAP97290.1|  820|Homo sapiens Ser/Arg-related nuclear
           matrix protein protein.
          Length = 820

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 481 PRNRRKIYQPPRNRV-TGPYKRRSPSP 404
           PR RR    PPR R  + P +RRSPSP
Sbjct: 565 PRRRRTPTPPPRRRTPSPPPRRRSPSP 591


>AF048977-1|AAC09321.1|  820|Homo sapiens Ser/Arg-related nuclear
           matrix protein protein.
          Length = 820

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 481 PRNRRKIYQPPRNRV-TGPYKRRSPSP 404
           PR RR    PPR R  + P +RRSPSP
Sbjct: 565 PRRRRTPTPPPRRRTPSPPPRRRSPSP 591


>BC109117-1|AAI09118.1|  871|Homo sapiens ARS2 protein protein.
          Length = 871

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 511 RGSSXXHRXGPRNRRKIYQPPRNRVTGPYKR 419
           R S   +R   RNRR+ + PPR+ ++ P KR
Sbjct: 49  RRSRGEYRDYDRNRRERFSPPRHELSPPQKR 79


>AF312032-4|AAK21005.1|  876|Homo sapiens ASR2A protein.
          Length = 876

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 511 RGSSXXHRXGPRNRRKIYQPPRNRVTGPYKR 419
           R S   +R   RNRR+ + PPR+ ++ P KR
Sbjct: 49  RRSRGEYRDYDRNRRERFSPPRHELSPPQKR 79


>AF312032-3|AAK21006.1|  872|Homo sapiens ASR2B protein.
          Length = 872

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 511 RGSSXXHRXGPRNRRKIYQPPRNRVTGPYKR 419
           R S   +R   RNRR+ + PPR+ ++ P KR
Sbjct: 49  RRSRGEYRDYDRNRRERFSPPRHELSPPQKR 79


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,393,572
Number of Sequences: 237096
Number of extensions: 1211955
Number of successful extensions: 2477
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2470
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)