Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18d16
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF106573-7|AAC78158.1|  838|Caenorhabditis elegans Hypothetical ...    29   2.4  
U41546-6|AAC48223.1|  798|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
 Frame = -1

Query: 529 RAPLXXRGSSXXHRXGPRNRRKIYQPPRNRVT-----GPYKRRSPSPYLRDRFP 383
           +AP   R  S      PR RR     PR R +      P +RRSPS   R R P
Sbjct: 462 QAPRRRRSPSGSKSRSPRRRRSPAAAPRRRQSPQRRRSPRRRRSPSSSSRSRSP 515


>AF106573-7|AAC78158.1|  838|Caenorhabditis elegans Hypothetical
           protein F52D2.6 protein.
          Length = 838

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 442 RVTGPYKRRSPSPYLRDRFPMWFGRNRES 356
           R+ GPY      P +R+ F  WF RN ES
Sbjct: 721 RLNGPYVIDPRVPLVRNMFRRWFHRNAES 749


>U41546-6|AAC48223.1|  798|Caenorhabditis elegans Hypothetical
           protein T25B6.2 protein.
          Length = 798

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 460 YQPPRNRVTGPYKRRSPSPYLRDRFP 383
           YQP RN +T PY   +P PY    +P
Sbjct: 576 YQPERNSITFPYAAWNP-PYYNLNYP 600


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,523,040
Number of Sequences: 27780
Number of extensions: 187453
Number of successful extensions: 463
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)