Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18d14
         (804 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747...    29   4.3  
01_01_0132 - 1197988-1198206,1198255-1198356,1198518-1198821,119...    28   10.0 

>01_01_0953 -
           7472173-7472178,7472216-7472311,7472370-7472462,
           7472855-7473019,7473689-7474821,7474902-7475426,
           7477077-7477249,7478737-7478831,7478893-7481688
          Length = 1693

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 407 KGEPL*N*TIYRYLYNFYQCS*KRVALALFPEMTCYICNTDNS*HDY 547
           + EP+   T+ R+L  F     K  ALAL P +  ++ +  N  H Y
Sbjct: 479 ESEPMLKATVLRFLKEFKDQIPKATALALLPSVIRFLIHESNVVHSY 525


>01_01_0132 -
           1197988-1198206,1198255-1198356,1198518-1198821,
           1199221-1199292,1199384-1199420,1199527-1199585,
           1199844-1200128,1200293-1200465,1201020-1201213,
           1202245-1202374
          Length = 524

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -1

Query: 705 NFQRQRR--HPATVPLVCFILGIPRRFFLGYSIQLNNKR 595
           N++R R+  H  +V L+C    +P   FLGY ++L  +R
Sbjct: 250 NYRRIRKVLHNLSVALICIAALMPVLAFLGYVLELYGQR 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,824,981
Number of Sequences: 37544
Number of extensions: 330111
Number of successful extensions: 564
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)