Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18d14
         (804 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099915-1|AAC68771.1|  460|Caenorhabditis elegans Hypothetical ...    30   2.2  
Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z95391-1|CAB08739.1|  360|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U76402-1|AAB39734.1|  777|Caenorhabditis elegans degenerin protein.    28   6.8  
U40798-3|AAA81473.2|  777|Caenorhabditis elegans Uncoordinated p...    28   6.8  

>AF099915-1|AAC68771.1|  460|Caenorhabditis elegans Hypothetical
           protein E02H9.6 protein.
          Length = 460

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -1

Query: 132 IIIYPVSLINVFYAHKTVMYYELNCVRSFEERTNVCKIXLI 10
           I I+P S+I++F+ H T+ Y   N +   +  T +C I LI
Sbjct: 323 IFIFPRSIISIFFRHHTIRYLLQNPI-YIQIPTLLCAIPLI 362


>Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical
           protein F16A11.1 protein.
          Length = 673

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 473 FMNTDKNYIGICKLFNSIKVHLFIKIMVFL 384
           F  T +N I ICK+F  +  H  IK+  +L
Sbjct: 280 FAQTRENQISICKMFTEMTTHPLIKMEEYL 309


>Z95391-1|CAB08739.1|  360|Caenorhabditis elegans Hypothetical
           protein H09F14.1 protein.
          Length = 360

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = -1

Query: 255 LEERAFRM*LFMSYVKIYIIDGISGNQVTKQRYLITIAHYRI 130
           +EE  F+  ++M  + + +I G+SGN ++    L+TI H R+
Sbjct: 1   MEETGFQFDVYMYLLPLIVIFGLSGNVIS----LVTIFHSRL 38


>U76402-1|AAB39734.1|  777|Caenorhabditis elegans degenerin protein.
          Length = 777

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +2

Query: 251 SKFYGNLPICCRYRRRENCFFFLFYSNLNYSSFVLTNGFS 370
           S  + +   C  Y R+   +  ++Y  LN+ S   T G++
Sbjct: 647 SDIFNDTEACTEYYRQNTAYIEIYYEQLNFESLKETAGYT 686


>U40798-3|AAA81473.2|  777|Caenorhabditis elegans Uncoordinated
           protein 8 protein.
          Length = 777

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +2

Query: 251 SKFYGNLPICCRYRRRENCFFFLFYSNLNYSSFVLTNGFS 370
           S  + +   C  Y R+   +  ++Y  LN+ S   T G++
Sbjct: 647 SDIFNDTEACTEYYRQNTAYIEIYYEQLNFESLKETAGYT 686


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,889,639
Number of Sequences: 27780
Number of extensions: 347573
Number of successful extensions: 702
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)