Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18d11
         (283 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    26   1.2  
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    25   1.6  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    23   6.3  
SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom...    23   6.3  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    23   6.3  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    23   6.3  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    23   8.3  

>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 144 ESRSRAIFIIFCKHC*ELGLPFYMKIHRFFVKSFIRK 34
           E     IF  FCK      +  Y +IHR F +SF +K
Sbjct: 775 EKVEEKIFSGFCKRIGISDIHTYDEIHRTFTQSFTQK 811


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 116 IMKIALDLDSCEYILHYTY-LQYIYNPYTLTVKI 214
           I + ++ +D   Y++   +  Q IYNPYT T K+
Sbjct: 304 IAETSITIDGIVYVVDSGFNKQRIYNPYTRTSKL 337


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 140 DSCEYILHYTYLQYIYNPY 196
           D+  Y+L   +LQY+Y+ Y
Sbjct: 406 DTSSYLLGQYFLQYVYSIY 424


>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 156 YCTTPTYNIYIILTR*PSKSNLKTHQPLPCQFHMKALVY 272
           YCT P Y+IY    + P  SN+  +  L C+  + A  Y
Sbjct: 50  YCTKPGYDIYGNSVQTP--SNVPYYSCLMCKREIAASRY 86


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 188 NPYTLTVKIQSKNPSAFTL 244
           NP  L   I S+NPSA+TL
Sbjct: 532 NPDKLIKTIFSQNPSAYTL 550


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 158 LHYTYLQYIYNPYTLTVKIQSKNPSAFTLSVP 253
           L  T   Y+ N  TL   +QS   S FT+SVP
Sbjct: 481 LPITPSSYLSNT-TLHSSVQSSQSSQFTVSVP 511


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 188 NPYTLTVKIQSKNPSAFTLSVPHE 259
           NP +L  + +S NPS  T+S P +
Sbjct: 575 NPVSLPNQQKSVNPSLMTVSSPRQ 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,211,521
Number of Sequences: 5004
Number of extensions: 23840
Number of successful extensions: 47
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)