Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18d11
         (283 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1289 - 35470076-35470243,35471032-35471108,35471935-354719...    25   6.8  
06_03_0596 + 22608835-22610263,22610411-22610531,22610765-226118...    25   9.0  
04_04_0426 + 25125590-25125670,25126171-25126256,25126423-251264...    25   9.0  
02_05_0799 - 31818142-31818422,31818966-31819029                       25   9.0  
01_06_1457 + 37508187-37508421,37509012-37509109,37509791-375099...    25   9.0  

>02_05_1289 -
           35470076-35470243,35471032-35471108,35471935-35471971,
           35472559-35472618,35472693-35472769,35473244-35473364,
           35473505-35473597,35473708-35473770,35475195-35475245,
           35475384-35475511,35476249-35476343,35476345-35476427,
           35476653-35476808,35477046-35477182,35477243-35477252,
           35477291-35477380,35477771-35478070,35479054-35479120,
           35479382-35479469,35480317-35480373,35480469-35480592
          Length = 693

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 191 PYTLTVKIQSKNPSAFTLSVP 253
           P+ L V + SK+P+AFT + P
Sbjct: 102 PWNLCVLVVSKSPTAFTSAFP 122


>06_03_0596 +
           22608835-22610263,22610411-22610531,22610765-22611864,
           22611969-22612327
          Length = 1002

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 104 CLQKIMKIALDLDSCEYILHYTYLQYIYNPYT 199
           C  K   I LDLD   Y+  +   +++YN  T
Sbjct: 831 CDLKPSNILLDLDMVAYVSDFGLARFVYNRLT 862


>04_04_0426 +
           25125590-25125670,25126171-25126256,25126423-25126471,
           25126547-25126675,25126973-25127055,25127791-25127959,
           25128038-25128103
          Length = 220

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -2

Query: 81  FYMKIHRFFVKSFIRKYYIP 22
           F+ ++H  ++K F+   Y+P
Sbjct: 105 FFQEVHELYIKIFLNPLYLP 124


>02_05_0799 - 31818142-31818422,31818966-31819029
          Length = 114

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 55  EKSMYFHIKWKP*FLTMFTKNN 120
           E S   H+KW+P ++ +F K N
Sbjct: 46  ELSQLLHLKWEPSWVELFHKMN 67


>01_06_1457 +
           37508187-37508421,37509012-37509109,37509791-37509904,
           37510361-37510426,37510659-37510745,37510902-37511012
          Length = 236

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 113 KIMKIALDLDSCEYILHYT 169
           K+MKI  DLD  + ILH T
Sbjct: 156 KLMKIQRDLDETKIILHKT 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,595,615
Number of Sequences: 37544
Number of extensions: 113795
Number of successful extensions: 187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)