Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18d11
         (283 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY014957-1|AAK00511.1| 3031|Homo sapiens PI-3-kinase-related kin...    30   1.6  
AF395444-1|AAM73708.1| 3521|Homo sapiens PI-3-kinase ATX protein.      30   1.6  
AF186377-1|AAK58892.1| 2392|Homo sapiens LIP isoform of BLIP pro...    30   1.6  
AB061371-1|BAB70696.1| 3657|Homo sapiens phosphatidylinositol 3-...    30   1.6  
AB007881-1|BAA24851.2| 1988|Homo sapiens KIAA0421 protein.             30   1.6  
AY726753-1|AAV52858.1|   83|Homo sapiens T-cell receptor beta ch...    29   2.1  
AK124361-1|BAC85839.1|  125|Homo sapiens protein ( Homo sapiens ...    27   8.4  

>AY014957-1|AAK00511.1| 3031|Homo sapiens PI-3-kinase-related kinase
            SMG-1 protein.
          Length = 3031

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 197  CKDYIYIVSRCSAVYIHRNRDQGLFSLFFVNI 102
            C+D +  + RC  V++H N ++G  SL  V I
Sbjct: 2108 CEDQLKEIERCIKVFLHENGEEGSLSLASVII 2139


>AF395444-1|AAM73708.1| 3521|Homo sapiens PI-3-kinase ATX protein.
          Length = 3521

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 197  CKDYIYIVSRCSAVYIHRNRDQGLFSLFFVNI 102
            C+D +  + RC  V++H N ++G  SL  V I
Sbjct: 2598 CEDQLKEIERCIKVFLHENGEEGSLSLASVII 2629


>AF186377-1|AAK58892.1| 2392|Homo sapiens LIP isoform of BLIP protein.
          Length = 2392

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 197  CKDYIYIVSRCSAVYIHRNRDQGLFSLFFVNI 102
            C+D +  + RC  V++H N ++G  SL  V I
Sbjct: 1469 CEDQLKEIERCIKVFLHENGEEGSLSLASVII 1500


>AB061371-1|BAB70696.1| 3657|Homo sapiens phosphatidylinositol
            3-kinase-related protein kinase protein.
          Length = 3657

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 197  CKDYIYIVSRCSAVYIHRNRDQGLFSLFFVNI 102
            C+D +  + RC  V++H N ++G  SL  V I
Sbjct: 2734 CEDQLKEIERCIKVFLHENGEEGSLSLASVII 2765


>AB007881-1|BAA24851.2| 1988|Homo sapiens KIAA0421 protein.
          Length = 1988

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 197  CKDYIYIVSRCSAVYIHRNRDQGLFSLFFVNI 102
            C+D +  + RC  V++H N ++G  SL  V I
Sbjct: 1065 CEDQLKEIERCIKVFLHENGEEGSLSLASVII 1096


>AY726753-1|AAV52858.1|   83|Homo sapiens T-cell receptor beta chain
           protein.
          Length = 83

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 191 PYTLTVKIQSKNPSAFTLSVPHEGTSL 271
           P+ LTV    KNP+AF L     GTSL
Sbjct: 26  PFPLTVTSAQKNPTAFYLCASATGTSL 52


>AK124361-1|BAC85839.1|  125|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42370 fis, clone UTERU2030280. ).
          Length = 125

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 128 ALDLDSCEYILHYTYLQYIYNPYTLTVKIQSKNPSAFT-LSVP 253
           +L L S   + H T L +  NP TLT+ + S  P + T L VP
Sbjct: 38  SLLLTSSHTLTHPTTLTHFQNPPTLTLTLASPFPCSVTSLQVP 80


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,934,636
Number of Sequences: 237096
Number of extensions: 738652
Number of successful extensions: 905
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 76,859,062
effective HSP length: 70
effective length of database: 60,262,342
effective search space used: 1386033866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)