Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18d11
         (283 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003787-1|AAO41470.1|  854|Drosophila melanogaster LD20919p pro...    26   8.2  
AE014297-957|AAF54391.1|  854|Drosophila melanogaster CG8165-PA ...    26   8.2  
AE014134-325|AAN10439.1|  126|Drosophila melanogaster CG31941-PA...    26   8.2  

>BT003787-1|AAO41470.1|  854|Drosophila melanogaster LD20919p
           protein.
          Length = 854

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 68  IFI*NGSPNS*QCLQKIMKIALDLDSCEYILHYTYLQY 181
           +FI  G+P+  Q L   +K+A D  S E I H  +L +
Sbjct: 766 VFIPAGAPHQVQNLHNCIKVAEDFVSPENITHCYHLTH 803


>AE014297-957|AAF54391.1|  854|Drosophila melanogaster CG8165-PA
           protein.
          Length = 854

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 68  IFI*NGSPNS*QCLQKIMKIALDLDSCEYILHYTYLQY 181
           +FI  G+P+  Q L   +K+A D  S E I H  +L +
Sbjct: 766 VFIPAGAPHQVQNLHNCIKVAEDFVSPENITHCYHLTH 803


>AE014134-325|AAN10439.1|  126|Drosophila melanogaster CG31941-PA,
           isoform A protein.
          Length = 126

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +2

Query: 35  FRINDLTKNLCIFI*NGSPNS*QCLQKIM-KIALDLDSCEYILHYTYLQYIYNPYTLTVK 211
           +R+   T N+  FI N        LQK+  K+  +  +C+ I         +  +   VK
Sbjct: 48  YRLKKKTHNVMCFI-NCIFERTNILQKVKEKVVKENHNCDSIKDADKCAESFQKFQCLVK 106

Query: 212 IQSKNPSAFTLSVP 253
           I+ K  SA T  VP
Sbjct: 107 IEMKRDSAATRHVP 120


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,726,879
Number of Sequences: 53049
Number of extensions: 211493
Number of successful extensions: 374
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 24,988,368
effective HSP length: 72
effective length of database: 21,168,840
effective search space used: 444545640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)