Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18d11
         (283 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41994-8|AAK31524.1|  752|Caenorhabditis elegans Hypothetical pr...    29   0.68 
U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine rece...    27   1.6  
U64847-3|AAB04872.1|  350|Caenorhabditis elegans Hypothetical pr...    27   2.1  
U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine rece...    27   2.1  
U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr...    25   6.3  
L10986-11|AAK93846.2|  203|Caenorhabditis elegans Hypothetical p...    25   8.4  

>U41994-8|AAK31524.1|  752|Caenorhabditis elegans Hypothetical
           protein F59A6.4 protein.
          Length = 752

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = +2

Query: 101 QCLQKIMKIALDLDSCEYILHYTYLQYIYNPYTLTVKIQSKNPSAFTLSVPHEGTSL 271
           + L+K +   L +D C +++    L+ I N ++L    ++ NPSAF   +  + TSL
Sbjct: 192 EILKKTINGPLSMD-CSFVVGLQMLRAIQNLHSLGYVHRNINPSAFNCGLGMDETSL 247


>U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 3 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 138 SIPVNIYCTTPTYNIYIIL 194
           S+   ++CT PTYN+ I++
Sbjct: 273 SVARGVFCTVPTYNLIIVI 291


>U64847-3|AAB04872.1|  350|Caenorhabditis elegans Hypothetical
           protein F08F3.6 protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 13  KKNRNVIFPNK*FNEKSMYFHIKWKP 90
           K+ +++IF N    E +++FH+ +KP
Sbjct: 52  KERKSIIFYNNWEREPAIFFHVDYKP 77


>U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 12 protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 153 IYCTTPTYNIYII 191
           +YC TPTYN+ I+
Sbjct: 282 VYCATPTYNLVIV 294


>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical protein
            C32E12.4 protein.
          Length = 1553

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 191  DYIYIVSRCSAVYIHRNRDQGLFSLF 114
            DY   VSR   +++  +  QGL+SLF
Sbjct: 1295 DYFEDVSRTHCIFLKNSFFQGLYSLF 1320


>L10986-11|AAK93846.2|  203|Caenorhabditis elegans Hypothetical
           protein F10E9.10 protein.
          Length = 203

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 116 IMKIALDLDSCEYILHYTYLQYIYNPYTLTVKIQSKNPS 232
           +  + L ++ C  I  +  LQY Y  Y L ++    NPS
Sbjct: 135 LSSVGLPINDCLKIDIFRDLQYFYAFYMLQLRSHFNNPS 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,480,184
Number of Sequences: 27780
Number of extensions: 125800
Number of successful extensions: 246
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)