Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18d07
(791 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|... 182 5e-47
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 84 2e-17
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 66 4e-12
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 57 3e-09
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T... 29 1.0
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 27 4.1
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 26 7.1
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 7.1
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 25 9.4
>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 182 bits (443), Expect = 5e-47
Identities = 93/210 (44%), Positives = 135/210 (64%), Gaps = 2/210 (0%)
Frame = -3
Query: 771 EQKITKSKDXQPTVRKFETLNLEPDQA--DGHEDDIALNDRKQAKNKITKFIAMDCEMVG 598
E K ++KF N P+ D + D + RK + K+IAMDCEMVG
Sbjct: 43 ENSYIVDKKRMNELKKFAKENDIPESQVLDAYGVDASKLTRKTNLETLGKYIAMDCEMVG 102
Query: 597 IGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRKEDLINGEDFSIVQK 418
+ D + +LARVS+VN G +YD +V+P+E+V D+RT VSG++ + + F VQ
Sbjct: 103 VADDMS--VLARVSIVNYHGHVVYDTYVRPKEKVTDWRTWVSGVKSFHMRDAPSFEKVQA 160
Query: 417 EVADVIRGKILVGHSLKNDLNVLFLSHPKRNIRDTSKYKPFKKITKGSTPSLKRLAKEIL 238
EVA ++ ++LVGH++ NDL VL LSHP+R IRDTS++ ++K+ KG TP LK+LA+ IL
Sbjct: 161 EVAKILDNRVLVGHAVHNDLKVLLLSHPRRMIRDTSRFSGYRKLAKGRTPGLKKLAEVIL 220
Query: 237 SIDIQHGEHSSVEDARAAMQLYRTVSKKWE 148
DIQ G+HSSV+DA+A M+LY+ V K+ +
Sbjct: 221 GRDIQSGQHSSVQDAQATMELYKKVKKEMD 250
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 84.2 bits (199), Expect = 2e-17
Identities = 67/169 (39%), Positives = 89/169 (52%), Gaps = 7/169 (4%)
Frame = -3
Query: 630 KFIAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRKEDL 451
K +A+DCEMV N +ARV++V+ + IYD+FVKP V DY T SGI +E L
Sbjct: 267 KILAIDCEMVRTE---NGLEIARVTIVDMKSEVIYDEFVKPESPVTDYVTQYSGITEEKL 323
Query: 450 INGED-FSIVQKEVADVI-RGKILVGHSLKNDLNVLFLSHPKRNIRDTSKYKPFKKITKG 277
N S VQ + + +L+GHSL +DLN L +HP +I DT+ T+G
Sbjct: 324 RNVTTVLSDVQSYLKKTVDNNTVLLGHSLNSDLNCLKFTHP--HIIDTAN---IYNHTRG 378
Query: 276 --STPSLKRLAKEILSIDIQHG---EHSSVEDARAAMQLYRTVSKKWEA 145
S PSLK LA + L +IQ H S EDA A + L + K A
Sbjct: 379 PPSKPSLKWLATKWLRREIQKAGALGHDSAEDALACVDLLKLKVKNGPA 427
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 66.5 bits (155), Expect = 4e-12
Identities = 57/162 (35%), Positives = 82/162 (50%), Gaps = 6/162 (3%)
Frame = -3
Query: 621 AMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRK----ED 454
A+DCE+ Y N LAR+++V K I D F+KP+ ++ T SGI E
Sbjct: 384 ALDCELC---YTTNGMELARLTVVAK-ESIIMDVFIKPKGKILSLNTRFSGIHDAKELES 439
Query: 453 LINGEDFSIVQKEVADVIRGKILVGHSLKNDLNVLFLSHPKRNIRDTSKYKPFKKITKGS 274
I + I KE+ + + IL+GH L+NDLN + L H + + DT+ +
Sbjct: 440 GITMDQMYIKIKELG-MNKNTILIGHGLENDLNAMRLIH--KRVIDTALLFTHAR-GPPF 495
Query: 273 TPSLKRLAKEILSIDIQHGEHSSVEDARAAMQL--YRTVSKK 154
SLK L K+ L IQ H S EDA +A+QL Y+T S +
Sbjct: 496 RYSLKYLTKKYLGTTIQTSTHDSEEDAVSALQLVFYKTKSNE 537
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1115
Score = 57.2 bits (132), Expect = 3e-09
Identities = 51/149 (34%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Frame = -3
Query: 570 LARVSLVNKFGDC----IYDKFVKPREEVKDYRTIVSGIRKEDLI-NGEDFSIVQKEVAD 406
LARVS++ G D +V ++V DY T SGI DL + +++V +VA
Sbjct: 919 LARVSVLRGEGPNKGLPFIDDYVATDDKVTDYLTEYSGIHPGDLDPDRSPYNVVPLKVAY 978
Query: 405 ------VIRGKILVGHSLKNDLNVLFLSHPKRNIRDTSKYKPFKKITKGSTPSLKRLAKE 244
V G I VGH L+ D ++ L P + DT F ++ SLK LA
Sbjct: 979 KKLRLLVNAGCIFVGHGLQKDFRIINLLVPPEQVVDTVDL--FFLSSRQRKLSLKFLAWY 1036
Query: 243 ILSIDIQHGEHSSVEDARAAMQLYRTVSK 157
+L +IQ EH S+EDA A++LY K
Sbjct: 1037 LLDEEIQLTEHDSIEDALTALKLYDCYDK 1065
>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 477
Score = 28.7 bits (61), Expect = 1.0
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = -3
Query: 276 STPSLKRLAKEILSIDIQHGEHSSVEDARAAMQLYRTVSKKWE 148
S +L+ L +E SI + H EH S A AAMQL +++ +K E
Sbjct: 331 SLEALQHLYQED-SISLNHIEHDSDSLAEAAMQLTQSMREKHE 372
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 78 YNNESSF*VIHLFFCSLFCRSVRLPTSSTQFCKVA*LPWHPLLS 209
Y SS V+H + + S LP+ + C++ + W PL+S
Sbjct: 111 YFFSSSSRVLHQKWTCVAQMSTHLPSDPLELCRIHSVAWSPLVS 154
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 25.8 bits (54), Expect = 7.1
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = -3
Query: 420 KEVADVIRGKILVGHSLKNDLNVLFLSHPKRNIRDTSKYKPFKKITKGSTPSLKRLAKEI 241
K+ + IRG +L G + N+ +VL PK DTS + F + + ++P+LK A +
Sbjct: 351 KQQSVPIRGLLLSG--IINNPDVL----PKNIYEDTS-FSVFANLVRSNSPTLKEHAIVV 403
Query: 240 LSI 232
SI
Sbjct: 404 FSI 406
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -3
Query: 396 GKILVGHSLKNDLNVLFLSHPKR--NIRDTSKYKPFKKI 286
GK+ V HSL+ + +L SHP + DT++ FK++
Sbjct: 2111 GKLPVTHSLEQIILLLLQSHPTQAEEEEDTNEADDFKQL 2149
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 25.4 bits (53), Expect = 9.4
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -2
Query: 304 QTIQKDNKRQYSVVETFS*RNTKH*HTARRAQLSRGCQGSYAT-LQNCVEEVGSRTERQK 128
Q I ++ S+VE +T+ RRA+ Q S A L +C E++ TERQ+
Sbjct: 144 QDITDLRQQNASLVEENQLLSTQSKQWERRARDEHEMQESLAVRLADCEEQLARETERQE 203
Query: 127 RLQ 119
+ +
Sbjct: 204 QYE 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,843
Number of Sequences: 5004
Number of extensions: 60611
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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