Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18d07
(791 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0490 - 17724878-17725045,17725264-17725342,17725434-177254... 147 1e-35
04_04_1390 - 33184233-33184478,33184601-33184705,33184783-331848... 86 3e-17
12_01_0552 + 4469009-4469080,4470052-4470117,4470808-4470941,447... 78 7e-15
02_05_0476 + 29337124-29337158,29338460-29338669,29338760-293389... 51 1e-06
01_06_0086 + 26293452-26294030,26295309-26295353,26295543-26296175 30 2.4
09_03_0029 + 11724581-11724583,11726413-11726610,11726874-117270... 29 5.6
07_03_1125 - 24162298-24162586,24162730-24162783,24162940-241630... 29 5.6
03_05_0169 + 21474655-21474771,21474879-21474971,21475553-214756... 29 5.6
02_03_0303 - 17506392-17506399,17507055-17507286,17507390-175074... 28 7.4
>08_02_0490 -
17724878-17725045,17725264-17725342,17725434-17725498,
17725569-17725657,17725750-17725858,17725969-17726047,
17727247-17727512
Length = 284
Score = 147 bits (356), Expect = 1e-35
Identities = 67/146 (45%), Positives = 102/146 (69%)
Frame = -3
Query: 552 VNKFGDCIYDKFVKPREEVKDYRTIVSGIRKEDLINGEDFSIVQKEVADVIRGKILVGHS 373
VN +G+ +YD++ +P E + DYRT +SGIR + + +DF +VQK+VA++I+G+ILVGH+
Sbjct: 116 VNSWGNVVYDEYTRPVERIVDYRTHISGIRPKHMNKAKDFWVVQKDVAELIKGRILVGHA 175
Query: 372 LKNDLNVLFLSHPKRNIRDTSKYKPFKKITKGSTPSLKRLAKEILSIDIQHGEHSSVEDA 193
L +DL VL L HPK++IRDTS+Y+ F++ +G SLK L ++L IQ EH +EDA
Sbjct: 176 LHHDLKVLLLGHPKKDIRDTSEYEVFRR--EGKRRSLKDLTAQVLGAKIQQKEHCPIEDA 233
Query: 192 RAAMQLYRTVSKKWEAGLSDRRGYKK 115
RAAM +Y K WE + ++ ++K
Sbjct: 234 RAAMFIYNKHKKVWEKNMKEQFRFRK 259
>04_04_1390 -
33184233-33184478,33184601-33184705,33184783-33184890,
33184967-33185101,33185263-33185363,33185495-33185564,
33185642-33185758,33186001-33186138,33186371-33186439,
33186556-33186645,33186758-33186940,33187020-33187052
Length = 464
Score = 86.2 bits (204), Expect = 3e-17
Identities = 65/181 (35%), Positives = 102/181 (56%), Gaps = 10/181 (5%)
Frame = -3
Query: 645 KNKITKF-----IAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRT 481
+ KIT F +A+DCEMV + +DG + L RV +VN + D+ V P + V DYRT
Sbjct: 132 EGKITNFMKSTMLAIDCEMV-LCHDGTE-ALVRVCVVNSNLEVKLDELVNPLKAVADYRT 189
Query: 480 IVSGIRKEDLINGEDFSI--VQKEVADVI-RGKILVGHSLKNDLNVLFLSHPKRNIRDTS 310
++G+ K+DL G S+ VQK + ++ +GKIL+GHSL DL+ L + + + DT+
Sbjct: 190 SITGLSKKDL-KGVTCSLVDVQKSLKKLLSKGKILIGHSLSKDLHALKFDYSR--VIDTA 246
Query: 309 KYKPFKKITKGSTPSLKRLAKEILSIDI-QHGE-HSSVEDARAAMQLYRTVSKKWEAGLS 136
+ + ++ SL L K +L + + GE H+ ++DA AAM L V K + G +
Sbjct: 247 YIFKYANLPTTASASLNSLCKSVLGYAVREEGEPHNCLKDAEAAMNL---VLAKLKHGFN 303
Query: 135 D 133
D
Sbjct: 304 D 304
>12_01_0552 +
4469009-4469080,4470052-4470117,4470808-4470941,
4471073-4471179,4471695-4471802,4471879-4471949,
4472126-4472185,4472264-4472319,4472663-4472723,
4472809-4473076,4473174-4473355,4473444-4473736,
4474048-4474138
Length = 522
Score = 78.2 bits (184), Expect = 7e-15
Identities = 58/156 (37%), Positives = 88/156 (56%), Gaps = 6/156 (3%)
Frame = -3
Query: 624 IAMDCEM--VGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRKEDL 451
+A+DCEM G++ L RV+LV+ G+ + DK VKP + DY T SGI E L
Sbjct: 180 LALDCEMCVTAAGFE-----LTRVTLVDIKGEVVLDKLVKPANPITDYNTRFSGITAEML 234
Query: 450 IN-GEDFSIVQKEVADVI-RGKILVGHSLKNDLNVLFLSHPKRNIRDTSKYKPFKKITKG 277
+ +Q+E ++ + +LVGHSL+NDL L +SH I DT+ + +
Sbjct: 235 ADVTTTLQEIQEEFVGLVHKETVLVGHSLENDLMALRISHDL--IIDTAVLYKHNRGHRF 292
Query: 276 STPSLKRLAKEILSIDIQH--GEHSSVEDARAAMQL 175
+L+ LAK+ L+ +IQ+ H SVEDA+AA++L
Sbjct: 293 KI-ALRVLAKKFLNREIQNTGSGHDSVEDAKAALEL 327
>02_05_0476 +
29337124-29337158,29338460-29338669,29338760-29338936,
29338937-29339165
Length = 216
Score = 50.8 bits (116), Expect = 1e-06
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 15/105 (14%)
Frame = -3
Query: 507 REEVKDYRTIVSGIRKEDLINGEDFSIVQKEVADVI---------------RGKILVGHS 373
RE + R ++GIR E L + +VQ+ + D++ R +ILVGH
Sbjct: 5 RESSETLRYEMTGIRPEYLRDAMPLKLVQRRIQDILCNGEPLWKIRPRSSGRARILVGHG 64
Query: 372 LKNDLNVLFLSHPKRNIRDTSKYKPFKKITKGSTPSLKRLAKEIL 238
L+++L L L +P IRDT+KY P K +K S SLK L + L
Sbjct: 65 LEHELERLGLEYPAFMIRDTAKYPPLMKTSKLSN-SLKYLTQAYL 108
>01_06_0086 + 26293452-26294030,26295309-26295353,26295543-26296175
Length = 418
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Frame = -3
Query: 618 MDCEMVGIGYDGNDH-----MLAR-VSLVNKFGDCIYDKFVKP-REEVKDYRTIVSG 469
++C + G+ DH ++ R V+LVNKF DC+ D++ P R +V +++V G
Sbjct: 340 LECHLHGVAGWHGDHRGFELVVDRDVALVNKFDDCLADEYPVPVRWKVHHNKSMVKG 396
>09_03_0029 +
11724581-11724583,11726413-11726610,11726874-11727038,
11727217-11727283,11727645-11727812,11728070-11728194,
11728288-11728446,11728552-11728714,11728795-11728920,
11729000-11729083,11729161-11729528,11729613-11729813,
11729909-11730018,11730113-11730197,11730360-11730488,
11730580-11730667,11730805-11730893,11730968-11731267
Length = 875
Score = 28.7 bits (61), Expect = 5.6
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
Frame = +1
Query: 628 LGYFVFSLFPVIKC-----YI-IF----MSVCLVRF*IQSFKFPNGWLXVFAF--GYFLF 771
L +FV S F +K YI +F + L RF ++ FPNGWL V G+ L+
Sbjct: 376 LAFFVASFFSSVKTATVIGYIYVFGSGLLGAFLFRFFVEDRTFPNGWLLVMEIVPGFSLY 435
Query: 772 R 774
R
Sbjct: 436 R 436
>07_03_1125 -
24162298-24162586,24162730-24162783,24162940-24163035,
24163149-24163190,24163688-24163756,24164262-24164284
Length = 190
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 361 SKCSVFVTSQTKYPGHI*VQTIQKDNKRQYSVVETFS 251
S+CSV V ++ Y ++ ++ +D KR Y ++ S
Sbjct: 11 SRCSVLVRTERDYRSYLVIRRFSQDLKRSYVIINRSS 47
>03_05_0169 +
21474655-21474771,21474879-21474971,21475553-21475642,
21475728-21475811,21476088-21476252,21476995-21477182,
21477363-21477435,21477766-21477819,21478019-21478276,
21478891-21479097,21479293-21479396,21479809-21479953,
21480108-21480242,21480610-21480783
Length = 628
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -3
Query: 474 SGIRKEDLINGEDFSIVQKEVADVIRGKILVGHSLKNDLNVLFLSHPKRNIRDTSKYKPF 295
S +R E L N + ++ + + +G I G S N + VLF +P + +D +K+ PF
Sbjct: 118 SPLRLEKLANEVTYRRMKDALVQLSKG-IQTGPSA-NLIPVLFGENPPMSSKDVAKFSPF 175
Query: 294 KK 289
K
Sbjct: 176 NK 177
>02_03_0303 -
17506392-17506399,17507055-17507286,17507390-17507461,
17507561-17508586,17509194-17509448,17510483-17510962
Length = 690
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 329 RLGCDKNRTFRSFFNECPTNILPLITSATSF*TI 430
R+ CD ++ +SF N+CP I LI T + +I
Sbjct: 319 RILCDSSKGAQSFLNKCPDMIQVLIDLTTEWKSI 352
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,156,238
Number of Sequences: 37544
Number of extensions: 333324
Number of successful extensions: 764
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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