Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18d07
(791 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023828-14|CAA19458.1| 269|Caenorhabditis elegans Hypothetical... 183 1e-46
AL132860-27|CAB60521.1| 365|Caenorhabditis elegans Hypothetical... 73 2e-13
AC006620-4|AAF39778.1| 305|Caenorhabditis elegans Hypothetical ... 73 2e-13
AF016430-4|AAB65372.1| 594|Caenorhabditis elegans Hypothetical ... 70 2e-12
U39850-9|AAM45371.1| 440|Caenorhabditis elegans Polyq (poly glu... 62 3e-10
U39850-8|AAM45369.1| 558|Caenorhabditis elegans Polyq (poly glu... 62 3e-10
U39850-7|AAM45370.1| 573|Caenorhabditis elegans Polyq (poly glu... 62 3e-10
U39850-5|AAM45368.1| 670|Caenorhabditis elegans Polyq (poly glu... 62 3e-10
U39850-4|ABB51184.1| 672|Caenorhabditis elegans Polyq (poly glu... 62 3e-10
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu... 62 3e-10
U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical pr... 62 6e-10
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 30 2.2
U64844-11|AAB18311.1| 482|Caenorhabditis elegans Hypothetical p... 29 3.8
>AL023828-14|CAA19458.1| 269|Caenorhabditis elegans Hypothetical
protein Y17G7B.12 protein.
Length = 269
Score = 183 bits (446), Expect = 1e-46
Identities = 97/223 (43%), Positives = 139/223 (62%), Gaps = 2/223 (0%)
Frame = -3
Query: 789 VETGKPEQKITKSKDXQPTVRKFETLNLEPDQADGHED-DIALNDRKQAKNKITKFIAMD 613
V+T K +QK+ + + Q E L + H D + + D + + ++TK IA+D
Sbjct: 55 VQTKKQKQKMNRKRRAQ------EALAAASEVKRVHHDIPVVIEDSE--RGELTKVIAID 106
Query: 612 CEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRKEDLINGEDF 433
CE VG G G +LAR+S+VN+ G +YDKFVKP E+V D+RT VSGIR E++I F
Sbjct: 107 CEYVGAGMGGTTDILARISIVNELGKIVYDKFVKPTEKVTDFRTAVSGIRPENMIKAIPF 166
Query: 432 SIVQKEVADVIRGKILVGHSLKNDLNVLFLSHPKRNIRDTSKYKPFKKITK-GSTPSLKR 256
Q EV+ +I G+I++GH++ ND VL L+H ++ RDT+K K + TPSLK+
Sbjct: 167 DRAQTEVSKLIDGRIVIGHAVHNDFRVLKLNHIRKLTRDTAKCTILKNMANHHGTPSLKK 226
Query: 255 LAKEILSIDIQHGEHSSVEDARAAMQLYRTVSKKWEAGLSDRR 127
LAKE+L I+IQ GEH S+ DAR A++LY V K+WEA + R
Sbjct: 227 LAKEVLGIEIQRGEHDSITDARVALRLYEAVKKQWEAEIKRYR 269
>AL132860-27|CAB60521.1| 365|Caenorhabditis elegans Hypothetical
protein Y56A3A.33 protein.
Length = 365
Score = 72.9 bits (171), Expect = 2e-13
Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
Frame = -3
Query: 642 NKITKFIAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIR 463
++ K A+DCE+V + N +ARVSLV+ G + D F P EV + + SG+
Sbjct: 176 HRSNKVFALDCELV---HTLNGLEVARVSLVDMKGKVLLDTFALPVFEVISFNSTFSGVT 232
Query: 462 KEDLINGEDFSIVQKEVADVIRGK-ILVGHSLKNDLNVLFLSHPKRNIRDTSKYKPFKKI 286
++D+ + + ++ +I + +LVGHSL++DL L L H N+ DT+
Sbjct: 233 EKDMESAISLEACRLQLFQLINSETLLVGHSLESDLKALRLVH--HNVIDTAVLFSIVDP 290
Query: 285 TKG--STPSLKRLAKEILSIDIQH--GEHSSVEDARAAMQLYRT 166
++ SL+ LAK+ L D+Q HSS+ED+ M+L T
Sbjct: 291 SRSYILKLSLQNLAKKYLCKDVQSEASGHSSIEDSHTCMELLAT 334
>AC006620-4|AAF39778.1| 305|Caenorhabditis elegans Hypothetical
protein C51G7.1 protein.
Length = 305
Score = 72.9 bits (171), Expect = 2e-13
Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
Frame = -3
Query: 642 NKITKFIAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIR 463
++ K A+DCE+V + N +ARVSLV+ G + D F P EV + + SG+
Sbjct: 139 HRSNKVFALDCELV---HTLNGLEVARVSLVDMKGKVLLDTFALPVFEVISFNSTFSGVT 195
Query: 462 KEDLINGEDFSIVQKEVADVIRGK-ILVGHSLKNDLNVLFLSHPKRNIRDTSKYKPFKKI 286
++D+ + + ++ +I + +LVGHSL++DL L L H N+ DT+
Sbjct: 196 EKDMESAISLEACRLQLFQLINSETLLVGHSLESDLKALRLVH--HNVIDTAVLFSIVDP 253
Query: 285 TKG--STPSLKRLAKEILSIDIQH--GEHSSVEDARAAMQLYRT 166
++ SL+ LAK+ L D+Q HSS+ED+ M+L T
Sbjct: 254 SRSYILKLSLQNLAKKYLCKDVQSEASGHSSIEDSHTCMELLAT 297
>AF016430-4|AAB65372.1| 594|Caenorhabditis elegans Hypothetical
protein C05C8.5 protein.
Length = 594
Score = 70.1 bits (164), Expect = 2e-12
Identities = 58/167 (34%), Positives = 83/167 (49%), Gaps = 7/167 (4%)
Frame = -3
Query: 654 KQAKNKITK---FIAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYR 484
KQ KI+ ++DCEM D + L R+S+V++F + I D VKP + DY
Sbjct: 209 KQGYKKISASSPMFSVDCEMCET--DVANRELTRISIVDEFENTILDTLVKPEGRITDYV 266
Query: 483 TIVSGIRKEDLINGEDFSI--VQKEVADVI-RGKILVGHSLKNDLNVLFLSHPKRNIRDT 313
T SGI D++ G ++ VQK + ++ ILVGHSL++DL + ++HP D
Sbjct: 267 TRWSGI-TPDMMEGVTTTLGDVQKAIQSLLPPDAILVGHSLEHDLQAMKMTHP--FCLDV 323
Query: 312 SKYKPFKKITKGSTPSLKRLAKEILSIDIQ-HGEHSSVEDARAAMQL 175
+ SLK L + L IQ H S EDA AAM+L
Sbjct: 324 GHVLNYTNSNTEFRNSLKNLTELFLGAQIQSEFGHCSYEDAWAAMRL 370
>U39850-9|AAM45371.1| 440|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform f
protein.
Length = 440
Score = 62.5 bits (145), Expect = 3e-10
Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 7/160 (4%)
Frame = -3
Query: 633 TKFIAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRKED 454
T+ A+DCEMV Y LAR+++V+ + + D FVKP +V D T SG+ E
Sbjct: 269 TRVYALDCEMV---YTIAGPALARLTMVDMQRNRVLDVFVKPPTDVLDPNTEFSGLTMEQ 325
Query: 453 LINGEDF--SIVQKEVADVIRGKILVGHSLKNDLNVLFLSHPKRNIRDTSKYKPFKKITK 280
+ + D + QK V IL+GHSL++DL + + H +N+ DT+ F+ T+
Sbjct: 326 INSAPDTLKTCHQKLFKYVNADTILIGHSLESDLKAMRVVH--KNVIDTAIL--FRS-TR 380
Query: 279 GSTPSLKRLAKEILSIDIQHGE-----HSSVEDARAAMQL 175
+ +LK L+ ++L +IQ H S+EDA + L
Sbjct: 381 DTKVALKVLSAKLLHKNIQGDNEDAIGHDSMEDALTCVDL 420
>U39850-8|AAM45369.1| 558|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform d
protein.
Length = 558
Score = 62.5 bits (145), Expect = 3e-10
Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 7/160 (4%)
Frame = -3
Query: 633 TKFIAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRKED 454
T+ A+DCEMV Y LAR+++V+ + + D FVKP +V D T SG+ E
Sbjct: 387 TRVYALDCEMV---YTIAGPALARLTMVDMQRNRVLDVFVKPPTDVLDPNTEFSGLTMEQ 443
Query: 453 LINGEDF--SIVQKEVADVIRGKILVGHSLKNDLNVLFLSHPKRNIRDTSKYKPFKKITK 280
+ + D + QK V IL+GHSL++DL + + H +N+ DT+ F+ T+
Sbjct: 444 INSAPDTLKTCHQKLFKYVNADTILIGHSLESDLKAMRVVH--KNVIDTAIL--FRS-TR 498
Query: 279 GSTPSLKRLAKEILSIDIQHGE-----HSSVEDARAAMQL 175
+ +LK L+ ++L +IQ H S+EDA + L
Sbjct: 499 DTKVALKVLSAKLLHKNIQGDNEDAIGHDSMEDALTCVDL 538
>U39850-7|AAM45370.1| 573|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform e
protein.
Length = 573
Score = 62.5 bits (145), Expect = 3e-10
Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 7/160 (4%)
Frame = -3
Query: 633 TKFIAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRKED 454
T+ A+DCEMV Y LAR+++V+ + + D FVKP +V D T SG+ E
Sbjct: 402 TRVYALDCEMV---YTIAGPALARLTMVDMQRNRVLDVFVKPPTDVLDPNTEFSGLTMEQ 458
Query: 453 LINGEDF--SIVQKEVADVIRGKILVGHSLKNDLNVLFLSHPKRNIRDTSKYKPFKKITK 280
+ + D + QK V IL+GHSL++DL + + H +N+ DT+ F+ T+
Sbjct: 459 INSAPDTLKTCHQKLFKYVNADTILIGHSLESDLKAMRVVH--KNVIDTAIL--FRS-TR 513
Query: 279 GSTPSLKRLAKEILSIDIQHGE-----HSSVEDARAAMQL 175
+ +LK L+ ++L +IQ H S+EDA + L
Sbjct: 514 DTKVALKVLSAKLLHKNIQGDNEDAIGHDSMEDALTCVDL 553
>U39850-5|AAM45368.1| 670|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform c
protein.
Length = 670
Score = 62.5 bits (145), Expect = 3e-10
Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 7/160 (4%)
Frame = -3
Query: 633 TKFIAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRKED 454
T+ A+DCEMV Y LAR+++V+ + + D FVKP +V D T SG+ E
Sbjct: 499 TRVYALDCEMV---YTIAGPALARLTMVDMQRNRVLDVFVKPPTDVLDPNTEFSGLTMEQ 555
Query: 453 LINGEDF--SIVQKEVADVIRGKILVGHSLKNDLNVLFLSHPKRNIRDTSKYKPFKKITK 280
+ + D + QK V IL+GHSL++DL + + H +N+ DT+ F+ T+
Sbjct: 556 INSAPDTLKTCHQKLFKYVNADTILIGHSLESDLKAMRVVH--KNVIDTAIL--FRS-TR 610
Query: 279 GSTPSLKRLAKEILSIDIQHGE-----HSSVEDARAAMQL 175
+ +LK L+ ++L +IQ H S+EDA + L
Sbjct: 611 DTKVALKVLSAKLLHKNIQGDNEDAIGHDSMEDALTCVDL 650
>U39850-4|ABB51184.1| 672|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform g
protein.
Length = 672
Score = 62.5 bits (145), Expect = 3e-10
Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 7/160 (4%)
Frame = -3
Query: 633 TKFIAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRKED 454
T+ A+DCEMV Y LAR+++V+ + + D FVKP +V D T SG+ E
Sbjct: 501 TRVYALDCEMV---YTIAGPALARLTMVDMQRNRVLDVFVKPPTDVLDPNTEFSGLTMEQ 557
Query: 453 LINGEDF--SIVQKEVADVIRGKILVGHSLKNDLNVLFLSHPKRNIRDTSKYKPFKKITK 280
+ + D + QK V IL+GHSL++DL + + H +N+ DT+ F+ T+
Sbjct: 558 INSAPDTLKTCHQKLFKYVNADTILIGHSLESDLKAMRVVH--KNVIDTAIL--FRS-TR 612
Query: 279 GSTPSLKRLAKEILSIDIQHGE-----HSSVEDARAAMQL 175
+ +LK L+ ++L +IQ H S+EDA + L
Sbjct: 613 DTKVALKVLSAKLLHKNIQGDNEDAIGHDSMEDALTCVDL 652
>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform b
protein.
Length = 1647
Score = 62.5 bits (145), Expect = 3e-10
Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 7/160 (4%)
Frame = -3
Query: 633 TKFIAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRKED 454
T+ A+DCEMV Y LAR+++V+ + + D FVKP +V D T SG+ E
Sbjct: 1476 TRVYALDCEMV---YTIAGPALARLTMVDMQRNRVLDVFVKPPTDVLDPNTEFSGLTMEQ 1532
Query: 453 LINGEDF--SIVQKEVADVIRGKILVGHSLKNDLNVLFLSHPKRNIRDTSKYKPFKKITK 280
+ + D + QK V IL+GHSL++DL + + H +N+ DT+ F+ T+
Sbjct: 1533 INSAPDTLKTCHQKLFKYVNADTILIGHSLESDLKAMRVVH--KNVIDTAIL--FRS-TR 1587
Query: 279 GSTPSLKRLAKEILSIDIQHGE-----HSSVEDARAAMQL 175
+ +LK L+ ++L +IQ H S+EDA + L
Sbjct: 1588 DTKVALKVLSAKLLHKNIQGDNEDAIGHDSMEDALTCVDL 1627
>U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical protein
F31E3.4 protein.
Length = 1131
Score = 61.7 bits (143), Expect = 6e-10
Identities = 55/154 (35%), Positives = 74/154 (48%), Gaps = 10/154 (6%)
Frame = -3
Query: 570 LARVSLVNKFGD-CIYDKFVKPREEVK--DYRTIVSGIRKEDLI--NGEDFSIVQKEV-- 412
+ R S V+ G+ I+D VK ++V+ DY T SGI K DL E + K +
Sbjct: 935 VGRASCVDSTGERIIFDDHVKLTDDVEVVDYLTKFSGIVKADLCPTTSEKYLTTHKRLLL 994
Query: 411 ---ADVIRGKILVGHSLKNDLNVLFLSHPKRNIRDTSKYKPFKKITKGSTPSLKRLAKEI 241
+ RG VGH+L ND VL + + I DT ++ SL+ L KEI
Sbjct: 995 RMHVLIQRGVTFVGHALHNDFTVLNVHVAESQIIDTVT---LMRLGTQRMLSLQFLVKEI 1051
Query: 240 LSIDIQHGEHSSVEDARAAMQLYRTVSKKWEAGL 139
L IQ H SV DAR A++LYR + E GL
Sbjct: 1052 LGETIQMEAHDSVVDARYALKLYRKYLEIKEQGL 1085
>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical
protein W06A7.3f protein.
Length = 2488
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/66 (25%), Positives = 27/66 (40%)
Frame = -3
Query: 771 EQKITKSKDXQPTVRKFETLNLEPDQADGHEDDIALNDRKQAKNKITKFIAMDCEMVGIG 592
+ + KSK+ P +N P +G ED+ + + N T I D E + G
Sbjct: 684 DDNVKKSKENTPKAENDTEINYLPGGEEGPEDNAEKRNEAVSPNDETSEIKQDLENLENG 743
Query: 591 YDGNDH 574
G D+
Sbjct: 744 ASGPDN 749
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical
protein W06A7.3c protein.
Length = 2484
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/66 (25%), Positives = 27/66 (40%)
Frame = -3
Query: 771 EQKITKSKDXQPTVRKFETLNLEPDQADGHEDDIALNDRKQAKNKITKFIAMDCEMVGIG 592
+ + KSK+ P +N P +G ED+ + + N T I D E + G
Sbjct: 684 DDNVKKSKENTPKAENDTEINYLPGGEEGPEDNAEKRNEAVSPNDETSEIKQDLENLENG 743
Query: 591 YDGNDH 574
G D+
Sbjct: 744 ASGPDN 749
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical
protein W06A7.3a protein.
Length = 2607
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/66 (25%), Positives = 27/66 (40%)
Frame = -3
Query: 771 EQKITKSKDXQPTVRKFETLNLEPDQADGHEDDIALNDRKQAKNKITKFIAMDCEMVGIG 592
+ + KSK+ P +N P +G ED+ + + N T I D E + G
Sbjct: 684 DDNVKKSKENTPKAENDTEINYLPGGEEGPEDNAEKRNEAVSPNDETSEIKQDLENLENG 743
Query: 591 YDGNDH 574
G D+
Sbjct: 744 ASGPDN 749
>U64844-11|AAB18311.1| 482|Caenorhabditis elegans Hypothetical
protein T22F3.8 protein.
Length = 482
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 601 YHFAV-HSNELGYFVFSLFPVIKCYIIFMSVCLVRF*IQSFKFPNGWLXVF 750
Y AV HS + + V + IKC +F++ LV + + W+ VF
Sbjct: 397 YKVAVLHSRQFAHVVLTAIQWIKCLALFVAPALVSIFVTNESIRQQWIWVF 447
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,901,008
Number of Sequences: 27780
Number of extensions: 342784
Number of successful extensions: 933
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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