Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18d06
         (784 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001776-1|AAN71531.1|  137|Drosophila melanogaster RH13862p pro...    36   0.082
AY060384-1|AAL25423.1|  145|Drosophila melanogaster LD28904p pro...    36   0.082
AE014296-949|AAN12119.1|  103|Drosophila melanogaster CG10640-PB...    36   0.082
AE014296-948|AAF50784.1|  145|Drosophila melanogaster CG10640-PA...    36   0.082

>BT001776-1|AAN71531.1|  137|Drosophila melanogaster RH13862p
           protein.
          Length = 137

 Score = 35.5 bits (78), Expect = 0.082
 Identities = 13/19 (68%), Positives = 18/19 (94%)
 Frame = -3

Query: 782 LMTLKDNMKLSQPPEGSTF 726
           +MT+K+N+KL+QPPEGS F
Sbjct: 119 IMTMKENLKLAQPPEGSCF 137


>AY060384-1|AAL25423.1|  145|Drosophila melanogaster LD28904p
           protein.
          Length = 145

 Score = 35.5 bits (78), Expect = 0.082
 Identities = 13/19 (68%), Positives = 18/19 (94%)
 Frame = -3

Query: 782 LMTLKDNMKLSQPPEGSTF 726
           +MT+K+N+KL+QPPEGS F
Sbjct: 127 IMTMKENLKLAQPPEGSCF 145


>AE014296-949|AAN12119.1|  103|Drosophila melanogaster CG10640-PB,
           isoform B protein.
          Length = 103

 Score = 35.5 bits (78), Expect = 0.082
 Identities = 13/19 (68%), Positives = 18/19 (94%)
 Frame = -3

Query: 782 LMTLKDNMKLSQPPEGSTF 726
           +MT+K+N+KL+QPPEGS F
Sbjct: 85  IMTMKENLKLAQPPEGSCF 103


>AE014296-948|AAF50784.1|  145|Drosophila melanogaster CG10640-PA,
           isoform A protein.
          Length = 145

 Score = 35.5 bits (78), Expect = 0.082
 Identities = 13/19 (68%), Positives = 18/19 (94%)
 Frame = -3

Query: 782 LMTLKDNMKLSQPPEGSTF 726
           +MT+K+N+KL+QPPEGS F
Sbjct: 127 IMTMKENLKLAQPPEGSCF 145


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,142,893
Number of Sequences: 53049
Number of extensions: 519359
Number of successful extensions: 738
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3613676352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)