Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18d05
         (436 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC071731-1|AAH71731.1|  328|Homo sapiens ATP synthase mitochondr...    38   0.015
BC018781-1|AAH18781.1|  328|Homo sapiens ATP synthase mitochondr...    38   0.015
BC008498-1|AAH08498.1|  328|Homo sapiens ATP synthase mitochondr...    38   0.015
AL593856-2|CAI16978.1|  328|Homo sapiens ATP synthase mitochondr...    38   0.015
AL136373-1|CAI14761.1|  328|Homo sapiens ATP synthase mitochondr...    38   0.015
AK026004-1|BAB15316.1|  328|Homo sapiens protein ( Homo sapiens ...    38   0.015

>BC071731-1|AAH71731.1|  328|Homo sapiens ATP synthase mitochondrial
           F1 complex assembly factor 1 protein.
          Length = 328

 Score = 37.9 bits (84), Expect = 0.015
 Identities = 21/87 (24%), Positives = 34/87 (39%)
 Frame = -3

Query: 434 IWEEYHQNKEVXSAXTXVDVYSXXKETXNHFPVFLFPXXRSQGYEFIMCQXSGHXVXLXP 255
           IW++Y   K+   A    + +          P FL    R +GYEF + Q +G  +    
Sbjct: 164 IWQQYFAAKDTVYAVIPAEKFDLIWNRAQSCPTFLCALPRREGYEFFVGQWTGTELHFTA 223

Query: 254 LLXXQVHKENAPECLTMVXXTXLSDNR 174
           L+  Q   E A   L +     L + +
Sbjct: 224 LINIQTRGEAAASQLILYHYPELKEEK 250


>BC018781-1|AAH18781.1|  328|Homo sapiens ATP synthase mitochondrial
           F1 complex assembly factor 1 protein.
          Length = 328

 Score = 37.9 bits (84), Expect = 0.015
 Identities = 21/87 (24%), Positives = 34/87 (39%)
 Frame = -3

Query: 434 IWEEYHQNKEVXSAXTXVDVYSXXKETXNHFPVFLFPXXRSQGYEFIMCQXSGHXVXLXP 255
           IW++Y   K+   A    + +          P FL    R +GYEF + Q +G  +    
Sbjct: 164 IWQQYFAAKDTVYAVIPAEKFDLIWNRAQSCPTFLCALPRREGYEFFVGQWTGTELHFTA 223

Query: 254 LLXXQVHKENAPECLTMVXXTXLSDNR 174
           L+  Q   E A   L +     L + +
Sbjct: 224 LINIQTRGEAAASQLILYHYPELKEEK 250


>BC008498-1|AAH08498.1|  328|Homo sapiens ATP synthase mitochondrial
           F1 complex assembly factor 1 protein.
          Length = 328

 Score = 37.9 bits (84), Expect = 0.015
 Identities = 21/87 (24%), Positives = 34/87 (39%)
 Frame = -3

Query: 434 IWEEYHQNKEVXSAXTXVDVYSXXKETXNHFPVFLFPXXRSQGYEFIMCQXSGHXVXLXP 255
           IW++Y   K+   A    + +          P FL    R +GYEF + Q +G  +    
Sbjct: 164 IWQQYFAAKDTVYAVIPAEKFDLIWNRAQSCPTFLCALPRREGYEFFVGQWTGTELHFTA 223

Query: 254 LLXXQVHKENAPECLTMVXXTXLSDNR 174
           L+  Q   E A   L +     L + +
Sbjct: 224 LINIQTRGEAAASQLILYHYPELKEEK 250


>AL593856-2|CAI16978.1|  328|Homo sapiens ATP synthase mitochondrial
           F1 complex assembly factor 1 protein.
          Length = 328

 Score = 37.9 bits (84), Expect = 0.015
 Identities = 21/87 (24%), Positives = 34/87 (39%)
 Frame = -3

Query: 434 IWEEYHQNKEVXSAXTXVDVYSXXKETXNHFPVFLFPXXRSQGYEFIMCQXSGHXVXLXP 255
           IW++Y   K+   A    + +          P FL    R +GYEF + Q +G  +    
Sbjct: 164 IWQQYFAAKDTVYAVIPAEKFDLIWNRAQSCPTFLCALPRREGYEFFVGQWTGTELHFTA 223

Query: 254 LLXXQVHKENAPECLTMVXXTXLSDNR 174
           L+  Q   E A   L +     L + +
Sbjct: 224 LINIQTRGEAAASQLILYHYPELKEEK 250


>AL136373-1|CAI14761.1|  328|Homo sapiens ATP synthase mitochondrial
           F1 complex assembly factor 1 protein.
          Length = 328

 Score = 37.9 bits (84), Expect = 0.015
 Identities = 21/87 (24%), Positives = 34/87 (39%)
 Frame = -3

Query: 434 IWEEYHQNKEVXSAXTXVDVYSXXKETXNHFPVFLFPXXRSQGYEFIMCQXSGHXVXLXP 255
           IW++Y   K+   A    + +          P FL    R +GYEF + Q +G  +    
Sbjct: 164 IWQQYFAAKDTVYAVIPAEKFDLIWNRAQSCPTFLCALPRREGYEFFVGQWTGTELHFTA 223

Query: 254 LLXXQVHKENAPECLTMVXXTXLSDNR 174
           L+  Q   E A   L +     L + +
Sbjct: 224 LINIQTRGEAAASQLILYHYPELKEEK 250


>AK026004-1|BAB15316.1|  328|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22351 fis, clone HRC06325. ).
          Length = 328

 Score = 37.9 bits (84), Expect = 0.015
 Identities = 21/87 (24%), Positives = 34/87 (39%)
 Frame = -3

Query: 434 IWEEYHQNKEVXSAXTXVDVYSXXKETXNHFPVFLFPXXRSQGYEFIMCQXSGHXVXLXP 255
           IW++Y   K+   A    + +          P FL    R +GYEF + Q +G  +    
Sbjct: 164 IWQQYFAAKDTVYAVIPAEKFDLIWNRAQSCPTFLCALPRREGYEFFVGQWTGTELHFTA 223

Query: 254 LLXXQVHKENAPECLTMVXXTXLSDNR 174
           L+  Q   E A   L +     L + +
Sbjct: 224 LINIQTRGEAAASQLILYHYPELKEEK 250


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,491,656
Number of Sequences: 237096
Number of extensions: 557069
Number of successful extensions: 647
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3487985734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)